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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.39836 (122 seq.)
>W1710861598
LMDT01000001
Alphaproteobacteria
Ensifer sp. Root1252 [LMDT]
812666
812577
-
Ser
GGA
[ENA]
¡û
>W1710862946
LMES01000012
Alphaproteobacteria
Ensifer sp. Root1312 [LMES]
98768
98857
+
Ser
GGA
[ENA]
¡û
>W1710863768
LMFK01000003
Alphaproteobacteria
Ensifer sp. Root142 [LMFK]
99383
99294
-
Ser
GGA
[ENA]
¡û
>W1710864785
LMGD01000020
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
211592
211681
+
Ser
GGA
[ENA]
¡û
>W1710867860
LMIQ01000001
Alphaproteobacteria
Ensifer sp. Root231 [LMIQ]
811461
811372
-
Ser
GGA
[ENA]
¡û
>W1710868197
LMIX01000001
Alphaproteobacteria
Ensifer sp. Root258 [LMIX]
530723
530634
-
Ser
GGA
[ENA]
¡û
>W1710868508
LMJD01000001
Alphaproteobacteria
Rhizobium sp. Root268 [LMJD]
1284118
1284207
+
Ser
GGA
[ENA]
¡û
>W1710868775
LMJJ01000001
Alphaproteobacteria
Ensifer sp. Root278 [LMJJ]
106636
106725
+
Ser
GGA
[ENA]
¡û
>W1710868933
LMJM01000052
Alphaproteobacteria
Ensifer sp. Root954 [LMJM]
577604
577515
-
Ser
GGA
[ENA]
¡û
>W1710909030
LNQC01000077
Alphaproteobacteria
Sinorhizobium americanum [LNQC]
171817
171728
-
Ser
GGA
[ENA]
¡û
>W1711120317
LUFV01000005
Alphaproteobacteria
Ensifer aridi [LUFV]
53742
53831
+
Ser
GGA
[ENA]
¡û
>W1711120367
LUFW01000012
Alphaproteobacteria
Ensifer aridi [LUFW]
53750
53839
+
Ser
GGA
[ENA]
¡û
>W1711314156
MAUG01000001
Alphaproteobacteria
Ensifer adhaerens [MAUG]
100123
100212
+
Ser
GGA
[ENA]
¡û
>W1711337850
MBSP01000003
Alphaproteobacteria
Ensifer sp. LC13 [MBSP]
89491
89402
-
Ser
GGA
[ENA]
¡û
>W1711337950
MBSQ01000072
Alphaproteobacteria
Ensifer sp. LC14 [MBSQ]
89535
89446
-
Ser
GGA
[ENA]
¡û
>W1711353265
MDDV01000010
Alphaproteobacteria
Ensifer sp. LCM 4579 [MDDV]
70893
70982
+
Ser
GGA
[ENA]
¡û
>W1711353321
MDDW01000013
Alphaproteobacteria
Rhizobium sp. LCM 4573 [MDDW]
124305
124394
+
Ser
GGA
[ENA]
¡û
>W1711606271
MOOY01000004
Alphaproteobacteria
Pararhizobium arenae MIM27 [MOOY]
259604
259515
-
Ser
GGA
[ENA]
¡û
>W1711751578
MUNW01000035
Alphaproteobacteria
Sinorhizobium sp. A49 [MUNW]
50837
50748
-
Ser
GGA
[ENA]
¡û
>C171123448
CP021800
Alphaproteobacteria
Sinorhizobium meliloti USDA1021 [CP021800]
2037412
2037323
-
Ser
GGA
-
¡û
>C171123686
CP021822
Alphaproteobacteria
Sinorhizobium meliloti KH46 [CP021822]
869391
869480
+
Ser
GGA
-
¡û
>C171123789
CP021829
Alphaproteobacteria
Sinorhizobium meliloti HM006 [CP021829]
711591
711680
+
Ser
GGA
-
¡û
>W131159060
AQUS01000307
Alphaproteobacteria
Sinorhizobium medicae WSM1369 [AQUS]
251170
251081
-
Ser
GGA
[ENA]
¡û
>W131160468
AQWP01000001
Alphaproteobacteria
Sinorhizobium meliloti 4H41 [AQWP]
113463
113552
+
Ser
GGA
[ENA]
¡û
>W131213986
ATTL01000008
Alphaproteobacteria
Sinorhizobium medicae DI28 [ATTL]
106559
106470
-
Ser
GGA
[ENA]
¡û
>W131214267
ATTR01000010
Alphaproteobacteria
Sinorhizobium medicae WSM244 [ATTR]
107050
106961
-
Ser
GGA
[ENA]
¡û
>W131216855
ATWE01000013
Alphaproteobacteria
Ensifer sp. USDA 6670 [ATWE]
87471
87382
-
Ser
GGA
[ENA]
¡û
>W131218857
ATYB01000014
Alphaproteobacteria
Sinorhizobium arboris LMG 14919 [ATYB]
3526688
3526777
+
Ser
GGA
[ENA]
¡û
>W131218909
ATYC01000022
Alphaproteobacteria
Sinorhizobium medicae WSM4191 [ATYC]
3573556
3573645
+
Ser
GGA
[ENA]
¡û
>W131219123
ATYH01000009
Alphaproteobacteria
Sinorhizobium meliloti CIAM1775 [ATYH]
125685
125596
-
Ser
GGA
[ENA]
¡û
>W131219468
ATYP01000032
Alphaproteobacteria
Sinorhizobium meliloti RRl128 [ATYP]
22780
22691
-
Ser
GGA
[ENA]
¡û
>W131220149
ATZD01000016
Alphaproteobacteria
Sinorhizobium meliloti Mlalz-1 [ATZD]
10350
10261
-
Ser
GGA
[ENA]
¡û
>C022769
CP000738
Alphaproteobacteria
Sinorhizobium medicae WSM419 [CP000738]
3625735
3625824
+
Ser
GGA
[Ensembl]
¡û
>W141152004
AXBL01000026
Alphaproteobacteria
Sinorhizobium meliloti BO21CC [AXBL]
393569
393658
+
Ser
GGA
[ENA]
¡û
>W141207621
AZNX01000013
Alphaproteobacteria
Ensifer aridi TW10 [AZNX]
107850
107939
+
Ser
GGA
[ENA]
¡û
>W141255054
CBTS010000378
Alphaproteobacteria
Sinorhizobium meliloti RU11/001 [CBTS]
7082
7171
+
Ser
GGA
[ENA]
¡û
>WENV183734388
PJTZ01004481
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
904
993
+
Ser
GGA
[ENA]
¢þ
>W141461537
JFGO01000067
Alphaproteobacteria
Sinorhizobium americanum CCGM7 [JFGO]
30355
30444
+
Ser
GGA
[ENA]
¡û
>C181037799
CP019485
Alphaproteobacteria
Sinorhizobium meliloti B401 [CP019485]
241367
241456
+
Ser
GGA
-
¡û
>C181037850
CP019488
Alphaproteobacteria
Sinorhizobium meliloti B399 [CP019488]
241332
241421
+
Ser
GGA
-
¡û
>C181075733
CP023063
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [CP023063]
3856631
3856720
+
Ser
GGA
-
¡û
>C181075784
CP023067
Alphaproteobacteria
Sinorhizobium sojae CCBAU 05684 [CP023067]
3495274
3495363
+
Ser
GGA
-
¡û
>C181075836
CP023070
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [CP023070]
3792407
3792496
+
Ser
GGA
-
¡û
>C181099182
CP024307
Alphaproteobacteria
Sinorhizobium fredii NXT3 [CP024307]
211994
212083
+
Ser
GGA
-
¡û
>C181176256
CP029231
Alphaproteobacteria
Sinorhizobium fredii CCBAU 45436 [CP029231]
3929421
3929510
+
Ser
GGA
-
¡û
>W141726278
JNAE01000181
Alphaproteobacteria
Ensifer adhaerens [JNAE]
164815
164726
-
Ser
GGA
[ENA]
¡û
>W141776114
JOKI01000026
Alphaproteobacteria
Pseudorhizobium pelagicum R1-200B2 [JOKI]
377
288
-
Ser
GGA
[ENA]
¡û
>W1910658192
MBFK01000061
Alphaproteobacteria
Sinorhizobium shofinae CCBAU 251167 [MBFK]
216787
216698
-
Ser
GGA
[ENA]
¡û
>W1910856492
NBUD01000009
Alphaproteobacteria
Sinorhizobium medicae Str15 [NBUD]
41731
41820
+
Ser
GGA
[ENA]
¡û
>W1910856546
NBUE01000021
Alphaproteobacteria
Sinorhizobium medicae Str14 [NBUE]
6854
6943
+
Ser
GGA
[ENA]
¡û
>W1910856634
NBUF01000203
Alphaproteobacteria
Sinorhizobium medicae Str13 [NBUF]
133679
133768
+
Ser
GGA
[ENA]
¡û
>W1910856655
NBUG01000079
Alphaproteobacteria
Sinorhizobium medicae Str12 [NBUG]
12151
12062
-
Ser
GGA
[ENA]
¡û
>W1910856726
NBUH01000219
Alphaproteobacteria
Sinorhizobium medicae Str11 [NBUH]
35485
35574
+
Ser
GGA
[ENA]
¡û
>W1910856820
NBUK01000010
Alphaproteobacteria
Sinorhizobium medicae Str8 [NBUK]
156706
156795
+
Ser
GGA
[ENA]
¡û
>W1910856873
NBUL01000178
Alphaproteobacteria
Sinorhizobium medicae Str7 [NBUL]
9134
9045
-
Ser
GGA
[ENA]
¡û
>W1910856939
NBUM01000080
Alphaproteobacteria
Sinorhizobium medicae Str6 [NBUM]
13267
13178
-
Ser
GGA
[ENA]
¡û
>W1910856991
NBUN01001179
Alphaproteobacteria
Sinorhizobium medicae Str5 [NBUN]
2043
1954
-
Ser
GGA
[ENA]
¡û
>W1910857004
NBUO01000106
Alphaproteobacteria
Sinorhizobium medicae Str4 [NBUO]
13155
13066
-
Ser
GGA
[ENA]
¡û
>W1910857100
NBUQ01000054
Alphaproteobacteria
Sinorhizobium medicae Str1 [NBUQ]
154193
154282
+
Ser
GGA
[ENA]
¡û
>W1910891701
NEXT01000002
Alphaproteobacteria
Sinorhizobium sp. LM21 [NEXT]
98396
98485
+
Ser
GGA
[ENA]
¡û
>C09108778
CP001389
Alphaproteobacteria
Sinorhizobium fredii NGR234 [CP001389]
3760618
3760707
+
Ser
GGA
[Ensembl]
¡û
>W1910942079
NJGD01000001
Alphaproteobacteria
Sinorhizobium meliloti AC50a [NJGD]
754674
754585
-
Ser
GGA
[ENA]
¡û
>W1911409674
NWTC01000005
Alphaproteobacteria
Sinorhizobium fredii PCH1 [NWTC]
124003
124092
+
Ser
GGA
[ENA]
¡û
>W1911409720
NWTD01000001
Alphaproteobacteria
Sinorhizobium sp. NG07B [NWTD]
62406
62495
+
Ser
GGA
[ENA]
¡û
>W1911412014
NWVE01000004
Alphaproteobacteria
Sinorhizobium sp. M4_45 [NWVE]
137010
137099
+
Ser
GGA
[ENA]
¡û
>W1911412933
NWVT01000007
Alphaproteobacteria
Ensifer sp. T2_8 [NWVT]
114277
114188
-
Ser
GGA
[ENA]
¡û
>W1911614506
POVM01000013
Alphaproteobacteria
Sinorhizobium meliloti 320 [POVM]
104193
104282
+
Ser
GGA
[ENA]
¡û
>W1810196995
PNFP01000001
Alphaproteobacteria
Ensifer adhaerens ST2 [PNFP]
96972
97061
+
Ser
GGA
[ENA]
¡û
>W1810346364
PVBN01000005
Alphaproteobacteria
Neorhizobium alkalisoli DSM 21826 [PVBN]
179524
179613
+
Ser
GGA
[ENA]
¡û
>W1810357238
PVNM01000268
Alphaproteobacteria
Sinorhizobium meliloti BM806 [PVNM]
51286
51375
+
Ser
GGA
[ENA]
¡û
>W1810403681
PYJO01000008
Alphaproteobacteria
Mesorhizobium loti LMG 6125 [PYJO]
51509
51598
+
Ser
GGA
[ENA]
¡û
>W1810448677
PZMI01000004
Alphaproteobacteria
Sinorhizobium meliloti AK555 [PZMI]
69084
69173
+
Ser
GGA
[ENA]
¡û
>W1810448726
PZMJ01000003
Alphaproteobacteria
Sinorhizobium meliloti CXM1-105 [PZMJ]
150881
150970
+
Ser
GGA
[ENA]
¡û
>W1810665688
QJNR01000004
Alphaproteobacteria
Ensifer sp. M14 [QJNR]
448873
448784
-
Ser
GGA
[ENA]
¡û
>W1810671961
QJTB01000001
Alphaproteobacteria
Ensifer adhaerens WJB133 25_10 [QJTB]
1304876
1304787
-
Ser
GGA
[ENA]
¡û
>W1810696380
QLTH01000001
Alphaproteobacteria
Ensifer adhaerens AG1206 [QLTH]
987894
987805
-
Ser
GGA
[ENA]
¡û
>W10126535
AEDG01000015
Alphaproteobacteria
Sinorhizobium meliloti BL225C [AEDG]
69320
69409
+
Ser
GGA
[ENA]
¡û
>W10126593
AEDH01000016
Alphaproteobacteria
Sinorhizobium meliloti AK83 [AEDH]
68851
68940
+
Ser
GGA
[ENA]
¡û
>W1511318838
JPYQ01000056
Alphaproteobacteria
Rhizobium sp. YS-1r [JPYQ]
960492
960581
+
Ser
GGA
[ENA]
¡û
>C11120793
CP002781
Alphaproteobacteria
Sinorhizobium meliloti AK83 [CP002781, CP002782, CP002783]
3662616
3662705
+
Ser
GGA
[Ensembl]
¡û
>C11120887
CP001830
Alphaproteobacteria
Sinorhizobium meliloti SM11 [CP001830]
3749133
3749222
+
Ser
GGA
[Ensembl]
¡û
>W11133796
AEDG01000015
Alphaproteobacteria
Sinorhizobium meliloti BL225C [AEDG]
69320
69409
+
Ser
GGA
[ENA]
¡û
>W11133854
AEDH01000016
Alphaproteobacteria
Sinorhizobium meliloti AK83 [AEDH]
68851
68940
+
Ser
GGA
[ENA]
¡û
>C121014596
CP003563
Alphaproteobacteria
Sinorhizobium fredii USDA 257 [CP003563]
6303039
6303128
+
Ser
GGA
[Ensembl]
¡û
>C121018142
HE616890
Alphaproteobacteria
Sinorhizobium fredii HH103 [HE616890]
4048935
4049024
+
Ser
GGA
[Ensembl]
¡û
>C161005645
CP007236
Alphaproteobacteria
Ensifer adhaerens OV14 [CP007236, CP007237]
1047628
1047717
+
Ser
GGA
[Ensembl]
¡û
>C161092091
CP015880
Alphaproteobacteria
Ensifer adhaerens Casida A [CP015880]
3850959
3851048
+
Ser
GGA
[Ensembl]
¡û
>W121021530
AGVV01000066
Alphaproteobacteria
Sinorhizobium meliloti CCNWSX0020 [AGVV]
21701
21612
-
Ser
GGA
[ENA]
¡û
>W121066073
AJQN01000258
Alphaproteobacteria
Sinorhizobium fredii CCBAU 25509 [AJQN]
4264
4353
+
Ser
GGA
[ENA]
¡û
>W121066200
AJQQ01000041
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83643 [AJQQ]
366
455
+
Ser
GGA
[ENA]
¡û
>W121066340
AJQT01000028
Alphaproteobacteria
Sinorhizobium sojae CCBAU 05684 [AJQT]
50216
50305
+
Ser
GGA
[ENA]
¡û
>W121066403
AJQU01000077
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [AJQU]
10587
10498
-
Ser
GGA
[ENA]
¡û
>W121103588
AKZR01000224
Alphaproteobacteria
Sinorhizobium meliloti H1 [AKZR]
10389
10300
-
Ser
GGA
[ENA]
¡û
>W121103751
AKZU01000653
Alphaproteobacteria
Sinorhizobium meliloti AK75 [AKZU]
10281
10192
-
Ser
GGA
[ENA]
¡û
>W121103881
AKZX01000269
Alphaproteobacteria
Sinorhizobium meliloti A0643DD [AKZX]
3886
3975
+
Ser
GGA
[ENA]
¡û
>W121103951
AKZY01000286
Alphaproteobacteria
Sinorhizobium meliloti A0641M [AKZY]
7049
7138
+
Ser
GGA
[ENA]
¡û
>W121103999
AKZZ01000076
Alphaproteobacteria
Sinorhizobium meliloti 5A14 [AKZZ]
38774
38685
-
Ser
GGA
[ENA]
¡û
>W1610024631
AUSY01000065
Alphaproteobacteria
Sinorhizobium sp. GW3 [AUSY]
23731
23642
-
Ser
GGA
[ENA]
¡û
>W1610024680
AUSZ01000310
Alphaproteobacteria
Sinorhizobium sp. GL28 [AUSZ]
99644
99733
+
Ser
GGA
[ENA]
¡û
>W1610024697
AUTA01000043
Alphaproteobacteria
Sinorhizobium sp. Sb3 [AUTA]
31745
31834
+
Ser
GGA
[ENA]
¡û
>C131010030
CP003933
Alphaproteobacteria
Sinorhizobium meliloti GR4 [CP003933]
238462
238551
+
Ser
GGA
[Ensembl]
¡û
>C131020446
HE995405
Alphaproteobacteria
Sinorhizobium meliloti Rm41 [HE995405]
3521290
3521379
+
Ser
GGA
[Ensembl]
¡û
>W1610723944
LMDT01000001
Alphaproteobacteria
Ensifer sp. Root1252 [LMDT]
812666
812577
-
Ser
GGA
[ENA]
¡û
>W1610725292
LMES01000012
Alphaproteobacteria
Ensifer sp. Root1312 [LMES]
98768
98857
+
Ser
GGA
[ENA]
¡û
>W1610726114
LMFK01000003
Alphaproteobacteria
Ensifer sp. Root142 [LMFK]
99383
99294
-
Ser
GGA
[ENA]
¡û
>W1610727131
LMGD01000020
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
211592
211681
+
Ser
GGA
[ENA]
¡û
>W1610730206
LMIQ01000001
Alphaproteobacteria
Ensifer sp. Root231 [LMIQ]
811461
811372
-
Ser
GGA
[ENA]
¡û
>W1610730543
LMIX01000001
Alphaproteobacteria
Ensifer sp. Root258 [LMIX]
530723
530634
-
Ser
GGA
[ENA]
¡û
>W1610730854
LMJD01000001
Alphaproteobacteria
Rhizobium sp. Root268 [LMJD]
1284118
1284207
+
Ser
GGA
[ENA]
¡û
>W1610731121
LMJJ01000001
Alphaproteobacteria
Ensifer sp. Root278 [LMJJ]
106636
106725
+
Ser
GGA
[ENA]
¡û
>W1610731279
LMJM01000052
Alphaproteobacteria
Ensifer sp. Root954 [LMJM]
577604
577515
-
Ser
GGA
[ENA]
¡û
>W1610767389
LNQC01000077
Alphaproteobacteria
Sinorhizobium americanum [LNQC]
171817
171728
-
Ser
GGA
[ENA]
¡û
>W1611059031
MAUG01000001
Alphaproteobacteria
Ensifer adhaerens [MAUG]
100123
100212
+
Ser
GGA
[ENA]
¡û
>W1611066778
MBSP01000003
Alphaproteobacteria
Ensifer sp. LC13 [MBSP]
89491
89402
-
Ser
GGA
[ENA]
¡û
>W1611066878
MBSQ01000072
Alphaproteobacteria
Ensifer sp. LC14 [MBSQ]
89535
89446
-
Ser
GGA
[ENA]
¡û
>W1710021072
AUSY01000065
Alphaproteobacteria
Sinorhizobium sp. GW3 [AUSY]
23731
23642
-
Ser
GGA
[ENA]
¡û
>W1710021121
AUSZ01000310
Alphaproteobacteria
Sinorhizobium sp. GL28 [AUSZ]
99644
99733
+
Ser
GGA
[ENA]
¡û
>W1710021138
AUTA01000043
Alphaproteobacteria
Sinorhizobium sp. Sb3 [AUTA]
31745
31834
+
Ser
GGA
[ENA]
¡û
>W1710509459
FMXF01000017
Alphaproteobacteria
Sinorhizobium sp. NFACC03 [FMXF]
32039
32128
+
Ser
GGA
[ENA]
¡û
>W1710561967
FOON01000008
Alphaproteobacteria
Ensifer sp. OV372 [FOON]
98560
98649
+
Ser
GGA
[ENA]
¡û
>W1710596601
FTMR01000011
Alphaproteobacteria
Rhizobium sp. RU35A [FTMR]
78559
78648
+
Ser
GGA
[ENA]
¡û
>W1710607658
FXAF01000006
Alphaproteobacteria
Xaviernesmea oryzae [FXAF]
592200
592111
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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