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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.398944 (40 seq.)
>W1710822130
LKUQ01000002
Actinomycetota
Bifidobacterium longum [LKUQ]
490
564
+
Gly
CCC
[ENA]
¡û
>WENV180136064
OATL01002630
[OATL] human gut metagenome; faeces
16
88
+
Gly
CCC
[ENA]
¢þ
>WENV180179749
OAWJ01006283
[OAWJ] human gut metagenome; faeces
12
84
+
Gly
CCC
[ENA]
¢þ
>WENV180245129
OBDM01002588
[OBDM] human gut metagenome; human gut
927
855
-
Gly
CCC
[ENA]
¢þ
>WENV180407103
OBUQ01000397
[OBUQ] human gut metagenome; faeces
12748
12676
-
Gly
CCC
[ENA]
¢þ
>WENV180444154
OBWZ01000188
[OBWZ] human gut metagenome; faeces
4582
4510
-
Gly
CCC
[ENA]
¢þ
>WENV180446624
OBXC01000415
[OBXC] human gut metagenome; faeces
4581
4509
-
Gly
CCC
[ENA]
¢þ
>WENV180505751
OCAQ01004436
[OCAQ] human gut metagenome; faeces
16
88
+
Gly
CCC
[ENA]
¢þ
>WENV181217000
OFCH01000019
[OFCH] metagenome; Human gut stool
52897
52825
-
Gly
CCC
[ENA]
¢þ
>WENV181220082
OFCQ01000055
[OFCQ] metagenome; Human gut stool
84118
84046
-
Gly
CCC
[ENA]
¢þ
>WENV181225720
OFDJ01000053
[OFDJ] metagenome; Human gut stool
61856
61784
-
Gly
CCC
[ENA]
¢þ
>WENV181935639
OGYU01010289
[OGYU] human gut metagenome; faeces
176
248
+
Gly
CCC
[ENA]
¢þ
>WENV182401056
OIER01000234
[OIER] human gut metagenome; human gut
37197
37269
+
Gly
CCC
[ENA]
¢þ
>WENV182946856
OKVL01000163
[OKVL] human gut metagenome; human gut
14800
14728
-
Gly
CCC
[ENA]
¢þ
>C183000901
CP021389
Actinomycetota
Bifidobacterium breve NRBB57 [CP021389]
1300205
1300131
-
Gly
CCC
-
¡û
>C183000955
CP021558
Actinomycetota
Bifidobacterium breve 215W447a [CP021558]
1298229
1298155
-
Gly
CCC
-
¡û
>C191208468
LR134354
Actinomycetota
Bifidobacterium longum subsp. infantis NCTC11817 [LR134354]
1464419
1464491
+
Gly
CCC
-
¡û
>W1910343130
FTRM01000010
Actinomycetota
Bifidobacterium longum [FTRM]
39394
39466
+
Gly
CCC
[ENA]
¡û
>W1910343219
FTRN01000031
Actinomycetota
Bifidobacterium longum [FTRN]
18565
18493
-
Gly
CCC
[ENA]
¡û
>W1910343433
FTRR01000017
Actinomycetota
Bifidobacterium longum [FTRR]
20997
20925
-
Gly
CCC
[ENA]
¡û
>C09102379
CP001095
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [CP001095]
1464624
1464698
+
Gly
CCC
-
¡û
>W1810161131
PJEC01000041
Actinomycetota
Bifidobacterium longum APC1466 [PJEC]
31184
31256
+
Gly
CCC
[ENA]
¡û
>W1810161195
PJED01000041
Actinomycetota
Bifidobacterium longum APC1465 [PJED]
31188
31260
+
Gly
CCC
[ENA]
¡û
>W1810814739
QSAM01000017
Actinomycetota
Bifidobacterium longum AF11-41 [QSAM]
979
1051
+
Gly
CCC
[ENA]
¡û
>W1810815036
QSAR01000029
Actinomycetota
Bifidobacterium longum AF11-12 [QSAR]
651
579
-
Gly
CCC
[ENA]
¡û
>W1810815737
QSBF01000007
Actinomycetota
Bifidobacterium longum AF05-2 [QSBF]
127784
127712
-
Gly
CCC
[ENA]
¡û
>W1510059596
CCWN01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1206122787 [CCWN]
4470
4544
+
Gly
CCC
[ENA]
¡û
>W1510059662
CCWO01000034
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1307292462 [CCWO]
4599
4673
+
Gly
CCC
[ENA]
¡û
>W1510059729
CCWP01000029
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401111250 [CCWP]
3921
3995
+
Gly
CCC
[ENA]
¡û
>W1510059796
CCWQ01000023
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621b [CCWQ]
4598
4672
+
Gly
CCC
[ENA]
¡û
>W1510059862
CCWR01000018
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845a [CCWR]
39346
39420
+
Gly
CCC
[ENA]
¡û
>W1510059929
CCWS01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621a [CCWS]
39374
39448
+
Gly
CCC
[ENA]
¡û
>W1510059996
CCWT01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845b [CCWT]
39370
39444
+
Gly
CCC
[ENA]
¡û
>W1510060063
CCWU01000020
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401242951 [CCWU]
39342
39416
+
Gly
CCC
[ENA]
¡û
>C11103158
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1464415
1464489
+
Gly
CCC
-
¡û
>C11103225
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1464415
1464489
+
Gly
CCC
-
¡û
>W1511357687
JRWN01000006
Actinomycetota
Bifidobacterium longum subsp. longum VMKB44 [JRWN]
54606
54532
-
Gly
CCC
[ENA]
¡û
>C161038262
CP011965
Actinomycetota
Bifidobacterium longum subsp. longum CCUG30698 [CP011965]
1190675
1190601
-
Gly
CCC
[Ensembl]
¡û
>W1610518905
JDTT01000026
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM DSM 20088 [JDTT]
46759
46685
-
Gly
CCC
[ENA]
¡û
>W1610686189
LKUQ01000002
Actinomycetota
Bifidobacterium longum [LKUQ]
490
564
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK