This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399066 (104 seq.)
>W1711274520
LZGN01000040
Gammaproteobacteria
Gilliamella apicola [LZGN]
89430
89356
-
Gln
TTG
[ENA]
¡û
>W1711274522
LZGN01000040
Gammaproteobacteria
Gilliamella apicola [LZGN]
89168
89094
-
Gln
TTG
[ENA]
¡û
>W1711274715
LZGR01000073
Gammaproteobacteria
Gilliamella apicola [LZGR]
688
614
-
Gln
TTG
[ENA]
¡û
>W1711274716
LZGR01000073
Gammaproteobacteria
Gilliamella apicola [LZGR]
438
364
-
Gln
TTG
[ENA]
¡û
>W1711274767
LZGT01000004
Gammaproteobacteria
Gilliamella apicola [LZGT]
14815
14741
-
Gln
TTG
[ENA]
¡û
>W1711274768
LZGT01000004
Gammaproteobacteria
Gilliamella apicola [LZGT]
14553
14479
-
Gln
TTG
[ENA]
¡û
>W1711274879
LZGV01000072
Gammaproteobacteria
Gilliamella apicola [LZGV]
7320
7394
+
Gln
TTG
[ENA]
¡û
>W1711274880
LZGV01000072
Gammaproteobacteria
Gilliamella apicola [LZGV]
7554
7628
+
Gln
TTG
[ENA]
¡û
>W1711275095
LZHA01000037
Gammaproteobacteria
Gilliamella apicola [LZHA]
92140
92214
+
Gln
TTG
[ENA]
¡û
>W1711275225
LZHD01000015
Gammaproteobacteria
Gilliamella apicola [LZHD]
139454
139528
+
Gln
TTG
[ENA]
¡û
>W1711275227
LZHD01000015
Gammaproteobacteria
Gilliamella apicola [LZHD]
139714
139788
+
Gln
TTG
[ENA]
¡û
>W1711275282
LZHE01000058
Gammaproteobacteria
Gilliamella apicola [LZHE]
2157
2231
+
Gln
TTG
[ENA]
¡û
>W1711275284
LZHE01000058
Gammaproteobacteria
Gilliamella apicola [LZHE]
2417
2491
+
Gln
TTG
[ENA]
¡û
>W1711275581
LZHL01000006
Gammaproteobacteria
Gilliamella apicola [LZHL]
12854
12780
-
Gln
TTG
[ENA]
¡û
>W1711275692
LZHN01000040
Gammaproteobacteria
Gilliamella apicola [LZHN]
137831
137905
+
Gln
TTG
[ENA]
¡û
>W1711275693
LZHN01000040
Gammaproteobacteria
Gilliamella apicola [LZHN]
138065
138139
+
Gln
TTG
[ENA]
¡û
>W1711275843
LZHQ01000027
Gammaproteobacteria
Gilliamella apicola [LZHQ]
85229
85155
-
Gln
TTG
[ENA]
¡û
>W1711275844
LZHQ01000027
Gammaproteobacteria
Gilliamella apicola [LZHQ]
84967
84893
-
Gln
TTG
[ENA]
¡û
>W131094461
AONZ01000078
Gammaproteobacteria
Dickeya sp. CSL RW240 [AONZ]
28405
28331
-
Gln
TTG
[ENA]
¡û
>W1711572472
MNBX01000011
Gammaproteobacteria
Sodalis sp. TME1 [MNBX]
3248
3174
-
Gln
TTG
[ENA]
¡û
>W1711621737
MPDL01000320
Gammaproteobacteria
Dickeya dadantii [MPDL]
156
82
-
Gln
TTG
[ENA]
¡û
>W1711903653
MZNE01000035
Gammaproteobacteria
Gilliamella apicola [MZNE]
24072
24146
+
Gln
TTG
[ENA]
¡û
>W1711903654
MZNE01000035
Gammaproteobacteria
Gilliamella apicola [MZNE]
24333
24407
+
Gln
TTG
[ENA]
¡û
>W1711903735
MZNG01000030
Gammaproteobacteria
Gilliamella apicola [MZNG]
23926
24000
+
Gln
TTG
[ENA]
¡û
>W1711903736
MZNG01000030
Gammaproteobacteria
Gilliamella apicola [MZNG]
24187
24261
+
Gln
TTG
[ENA]
¡û
>W1711939080
NARP01000001
Gammaproteobacteria
Gilliamella apicola [NARP]
49779
49853
+
Gln
TTG
[ENA]
¡û
>W1711939081
NARP01000001
Gammaproteobacteria
Gilliamella apicola [NARP]
50040
50114
+
Gln
TTG
[ENA]
¡û
>W1711939183
NARR01000007
Gammaproteobacteria
Gilliamella apicola [NARR]
29959
29885
-
Gln
TTG
[ENA]
¡û
>W1711939184
NARR01000007
Gammaproteobacteria
Gilliamella apicola [NARR]
29699
29625
-
Gln
TTG
[ENA]
¡û
>W1711939280
NART01000007
Gammaproteobacteria
Gilliamella apicola [NART]
24397
24323
-
Gln
TTG
[ENA]
¡û
>W1711939281
NART01000007
Gammaproteobacteria
Gilliamella apicola [NART]
24136
24062
-
Gln
TTG
[ENA]
¡û
>W1711939360
NARV01000002
Gammaproteobacteria
Gilliamella apicola [NARV]
103327
103401
+
Gln
TTG
[ENA]
¡û
>W1711939361
NARV01000002
Gammaproteobacteria
Gilliamella apicola [NARV]
103587
103661
+
Gln
TTG
[ENA]
¡û
>W1711939526
NARY01000139
Gammaproteobacteria
Gilliamella apicola [NARY]
28540
28466
-
Gln
TTG
[ENA]
¡û
>W1711939527
NARY01000139
Gammaproteobacteria
Gilliamella apicola [NARY]
28281
28207
-
Gln
TTG
[ENA]
¡û
>W1711939642
NASB01000001
Gammaproteobacteria
Gilliamella apicola [NASB]
285639
285713
+
Gln
TTG
[ENA]
¡û
>W1711939643
NASB01000001
Gammaproteobacteria
Gilliamella apicola [NASB]
285900
285974
+
Gln
TTG
[ENA]
¡û
>W1711939803
NASE01000014
Gammaproteobacteria
Gilliamella apis NO16 [NASE]
60951
60877
-
Gln
TTG
[ENA]
¡û
>W1711939804
NASE01000014
Gammaproteobacteria
Gilliamella apis NO16 [NASE]
60746
60672
-
Gln
TTG
[ENA]
¡û
>W1711939848
NASF01000016
Gammaproteobacteria
Gilliamella apis NO14 [NASF]
32176
32102
-
Gln
TTG
[ENA]
¡û
>W1711939849
NASF01000016
Gammaproteobacteria
Gilliamella apis NO14 [NASF]
31971
31897
-
Gln
TTG
[ENA]
¡û
>W1711939983
NASI01000040
Gammaproteobacteria
Gilliamella apis NO1 [NASI]
17389
17463
+
Gln
TTG
[ENA]
¡û
>W1711939984
NASI01000040
Gammaproteobacteria
Gilliamella apis NO1 [NASI]
17594
17668
+
Gln
TTG
[ENA]
¡û
>W1711940259
NASO01000033
Gammaproteobacteria
Gilliamella apis A-TSA1 [NASO]
6795
6721
-
Gln
TTG
[ENA]
¡û
>W1711940260
NASO01000033
Gammaproteobacteria
Gilliamella apis A-TSA1 [NASO]
6592
6518
-
Gln
TTG
[ENA]
¡û
>W1711940563
NASV01000037
Gammaproteobacteria
Gilliamella apis N-G4 [NASV]
6437
6363
-
Gln
TTG
[ENA]
¡û
>W1711940564
NASV01000037
Gammaproteobacteria
Gilliamella apis N-G4 [NASV]
6234
6160
-
Gln
TTG
[ENA]
¡û
>W1711940609
NASW01000013
Gammaproteobacteria
Gilliamella sp. N-W3 [NASW]
65001
65075
+
Gln
TTG
[ENA]
¡û
>C171045351
CP016043
Gammaproteobacteria
Edwardsiella hoshinae ATCC 35051 [CP016043]
950285
950211
-
Gln
TTG
-
¡û
>W141136625
AWGA01000023
Gammaproteobacteria
Candidatus Schmidhempelia bombi bombi str. Bimp [AWGA]
17045
16971
-
Gln
TTG
[ENA]
¡û
>W141147756
AWXH01000002
Gammaproteobacteria
Serratia sp. ATCC 39006 [AWXH]
1740979
1740905
-
Gln
TTG
[ENA]
¡û
>W141207917
AZOD01000014
Gammaproteobacteria
Ignatzschineria larvae DSM 13226 [AZOD]
76515
76589
+
Gln
TTG
[ENA]
¡û
>WENV183684316
ORMF010693523
[ORMF] groundwater metagenome; groundwater
354
428
+
Gln
TTG
[ENA]
¢þ
>C181203490
LN854557
Gammaproteobacteria
Sodalis glossinidius str. 'morsitans' [LN854557]
1421310
1421236
-
Gln
TTG
-
¡û
>C09106004
CP001600
Gammaproteobacteria
Edwardsiella ictaluri 93-146 [CP001600]
2809121
2809195
+
Gln
TTG
[Ensembl]
¡û
>W1911584680
PIPI01000001
Gammaproteobacteria
Aliidiomarina haloalkalitolerans AK5 [PIPI]
844233
844307
+
Gln
TTG
[ENA]
¡û
>W1911584681
PIPI01000001
Gammaproteobacteria
Aliidiomarina haloalkalitolerans AK5 [PIPI]
844366
844440
+
Gln
TTG
[ENA]
¡û
>W1911584735
PIPJ01000003
Gammaproteobacteria
Aliidiomarina iranensis GBPy7 [PIPJ]
153103
153029
-
Gln
TTG
[ENA]
¡û
>W1911584736
PIPJ01000003
Gammaproteobacteria
Aliidiomarina iranensis GBPy7 [PIPJ]
152981
152907
-
Gln
TTG
[ENA]
¡û
>W1911584982
PIPO01000001
Gammaproteobacteria
Aliidiomarina soli Y4G10-17 [PIPO]
148820
148746
-
Gln
TTG
[ENA]
¡û
>W1911584983
PIPO01000001
Gammaproteobacteria
Aliidiomarina soli Y4G10-17 [PIPO]
148704
148630
-
Gln
TTG
[ENA]
¡û
>W1911586003
PIQJ01000001
Gammaproteobacteria
Pseudidiomarina tainanensis PIN1 [PIQJ]
867876
867802
-
Gln
TTG
[ENA]
¡û
>W1810504601
QBLD01000001
Gammaproteobacteria
Edwardsiella ictaluri S97-773 [QBLD]
178153
178227
+
Gln
TTG
[ENA]
¡û
>W1810534561
QDAD01000008
Gammaproteobacteria
Edwardsiella ictaluri S07-698 [QDAD]
118225
118151
-
Gln
TTG
[ENA]
¡û
>W1810582745
QEWQ01000003
Gammaproteobacteria
Ignatzschineria ureiclastica KCTC 22644 [QEWQ]
344529
344603
+
Gln
TTG
[ENA]
¡û
>W1810582960
QEWU01000002
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU59 [QEWU]
378677
378603
-
Gln
TTG
[ENA]
¡û
>W1810582961
QEWU01000002
Gammaproteobacteria
Ignatzschineria cameli UAE-HKU59 [QEWU]
377510
377436
-
Gln
TTG
[ENA]
¡û
>W1810628776
QICT01000001
Gammaproteobacteria
Gilliamella apicola DSM 104097 [QICT]
286756
286830
+
Gln
TTG
[ENA]
¡û
>W1810628777
QICT01000001
Gammaproteobacteria
Gilliamella apicola DSM 104097 [QICT]
287017
287091
+
Gln
TTG
[ENA]
¡û
>W1810705106
QMIL01000003
Gammaproteobacteria
Aliidiomarina celeris F3105 [QMIL]
173392
173318
-
Gln
TTG
[ENA]
¡û
>W1810705107
QMIL01000003
Gammaproteobacteria
Aliidiomarina celeris F3105 [QMIL]
173253
173179
-
Gln
TTG
[ENA]
¡û
>W1810706718
QMKJ01000001
Gammaproteobacteria
Aliidiomarina sp. B3213 [QMKJ]
702289
702363
+
Gln
TTG
[ENA]
¡û
>W1810706719
QMKJ01000001
Gammaproteobacteria
Aliidiomarina sp. B3213 [QMKJ]
702390
702464
+
Gln
TTG
[ENA]
¡û
>W1511644027
LDWX01000032
Gammaproteobacteria
Edwardsiella ictaluri LADL11-100 [LDWX]
16973
17047
+
Gln
TTG
[ENA]
¡û
>W1511646098
LEAL01000031
Gammaproteobacteria
Edwardsiella ictaluri LADL11-194 [LEAL]
17017
17091
+
Gln
TTG
[ENA]
¡û
>C161108627
LN999832
Gammaproteobacteria
Candidatus Gullanella endobia [LN999832]
908199
908128
-
Gln
TTG
[Ensembl]
¡û
>C161108689
LN999835
Gammaproteobacteria
Candidatus Hoaglandella endobia [LN999835]
599681
599755
+
Gln
TTG
-
¡û
>W121004055
AFJI01000053
Gammaproteobacteria
Edwardsiella ictaluri ATCC 33202 [AFJI]
56518
56444
-
Gln
TTG
[ENA]
¡û
>W1610514918
FMAQ01000003
Gammaproteobacteria
Gilliamella bombicola R-53248 [FMAQ]
178121
178047
-
Gln
TTG
[ENA]
¡û
>W1610514920
FMAQ01000003
Gammaproteobacteria
Gilliamella bombicola R-53248 [FMAQ]
177864
177790
-
Gln
TTG
[ENA]
¡û
>W1610515449
FMBA01000001
Gammaproteobacteria
Gilliamella intestini R-53144 [FMBA]
64683
64757
+
Gln
TTG
[ENA]
¡û
>W1610515450
FMBA01000001
Gammaproteobacteria
Gilliamella intestini R-53144 [FMBA]
64940
65014
+
Gln
TTG
[ENA]
¡û
>W1611033805
LZGN01000040
Gammaproteobacteria
Gilliamella apicola [LZGN]
89430
89356
-
Gln
TTG
[ENA]
¡û
>W1611033807
LZGN01000040
Gammaproteobacteria
Gilliamella apicola [LZGN]
89168
89094
-
Gln
TTG
[ENA]
¡û
>W1611034000
LZGR01000073
Gammaproteobacteria
Gilliamella apicola [LZGR]
688
614
-
Gln
TTG
[ENA]
¡û
>W1611034001
LZGR01000073
Gammaproteobacteria
Gilliamella apicola [LZGR]
438
364
-
Gln
TTG
[ENA]
¡û
>W1611034052
LZGT01000004
Gammaproteobacteria
Gilliamella apicola [LZGT]
14815
14741
-
Gln
TTG
[ENA]
¡û
>W1611034053
LZGT01000004
Gammaproteobacteria
Gilliamella apicola [LZGT]
14553
14479
-
Gln
TTG
[ENA]
¡û
>W1611034164
LZGV01000072
Gammaproteobacteria
Gilliamella apicola [LZGV]
7320
7394
+
Gln
TTG
[ENA]
¡û
>W1611034165
LZGV01000072
Gammaproteobacteria
Gilliamella apicola [LZGV]
7554
7628
+
Gln
TTG
[ENA]
¡û
>W1611034380
LZHA01000037
Gammaproteobacteria
Gilliamella apicola [LZHA]
92140
92214
+
Gln
TTG
[ENA]
¡û
>W1611034510
LZHD01000015
Gammaproteobacteria
Gilliamella apicola [LZHD]
139454
139528
+
Gln
TTG
[ENA]
¡û
>W1611034512
LZHD01000015
Gammaproteobacteria
Gilliamella apicola [LZHD]
139714
139788
+
Gln
TTG
[ENA]
¡û
>W1611034567
LZHE01000058
Gammaproteobacteria
Gilliamella apicola [LZHE]
2157
2231
+
Gln
TTG
[ENA]
¡û
>W1611034569
LZHE01000058
Gammaproteobacteria
Gilliamella apicola [LZHE]
2417
2491
+
Gln
TTG
[ENA]
¡û
>W1611034866
LZHL01000006
Gammaproteobacteria
Gilliamella apicola [LZHL]
12854
12780
-
Gln
TTG
[ENA]
¡û
>W1611034977
LZHN01000040
Gammaproteobacteria
Gilliamella apicola [LZHN]
137831
137905
+
Gln
TTG
[ENA]
¡û
>W1611034978
LZHN01000040
Gammaproteobacteria
Gilliamella apicola [LZHN]
138065
138139
+
Gln
TTG
[ENA]
¡û
>W1611035128
LZHQ01000027
Gammaproteobacteria
Gilliamella apicola [LZHQ]
85229
85155
-
Gln
TTG
[ENA]
¡û
>W1611035129
LZHQ01000027
Gammaproteobacteria
Gilliamella apicola [LZHQ]
84967
84893
-
Gln
TTG
[ENA]
¡û
>W1710500608
FMAQ01000003
Gammaproteobacteria
Gilliamella bombicola R-53248 [FMAQ]
178121
178047
-
Gln
TTG
[ENA]
¡û
>W1710500610
FMAQ01000003
Gammaproteobacteria
Gilliamella bombicola R-53248 [FMAQ]
177864
177790
-
Gln
TTG
[ENA]
¡û
>W1710501139
FMBA01000001
Gammaproteobacteria
Gilliamella intestini R-53144 [FMBA]
64683
64757
+
Gln
TTG
[ENA]
¡û
>W1710501140
FMBA01000001
Gammaproteobacteria
Gilliamella intestini R-53144 [FMBA]
64940
65014
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK