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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399666 (117 seq.)
>W1711148393
LVKL01000013
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
65190
65264
+
Gly
GCC
[ENA]
¡û
>W1711148402
LVKL01000072
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
21350
21424
+
Gly
GCC
[ENA]
¡û
>W1711360533
MDJR01000010
Bacillota
Caloranaerobacter ferrireducens [MDJR]
30544
30618
+
Gly
GCC
[ENA]
¡û
>W1711360540
MDJR01000015
Bacillota
Caloranaerobacter ferrireducens [MDJR]
11311
11237
-
Gly
GCC
[ENA]
¡û
>W1711391628
MELW01000320
Bacillota
Alicyclobacillus sp. RIFOXYA1_FULL_53_8 [MELW]
18358
18432
+
Gly
GCC
[ENA]
¡û
>C171059872
CP017269
Bacillota
Geosporobacter ferrireducens IRF9 [CP017269]
813405
813331
-
Gly
GCC
-
¡û
>C171119041
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
2021990
2022064
+
Gly
GCC
-
¡û
>C171119056
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
2861803
2861877
+
Gly
GCC
-
¡û
>C171119065
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3053645
3053719
+
Gly
GCC
-
¡û
>C171119073
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3058063
3058137
+
Gly
GCC
-
¡û
>C171119084
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3262295
3262369
+
Gly
GCC
-
¡û
>C171119096
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3263562
3263636
+
Gly
GCC
-
¡û
>C171119113
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3316218
3316292
+
Gly
GCC
-
¡û
>C171119126
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3437430
3437504
+
Gly
GCC
-
¡û
>C171119156
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
4539362
4539288
-
Gly
GCC
-
¡û
>C171119164
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
60976
60902
-
Gly
GCC
-
¡û
>C171119179
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
18554
18480
-
Gly
GCC
-
¡û
>C171119185
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
17655
17581
-
Gly
GCC
-
¡û
>C171119188
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
16993
16919
-
Gly
GCC
-
¡û
>W131219068
ATYG01000002
Bacillota
Carboxydothermus ferrireducens DSM 11255 [ATYG]
136359
136285
-
Gly
GCC
[ENA]
¡û
>W131222970
AUBR01000049
Bacillota
Desulfovirgula thermocuniculi DSM 16036 [AUBR]
9625
9699
+
Gly
GCC
[ENA]
¡û
>W131242941
CAOS01000001
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
133102
133176
+
Gly
GCC
[ENA]
¡û
>W131242976
CAOS01000009
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
95332
95406
+
Gly
GCC
[ENA]
¡û
>W131242979
CAOS01000009
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
97250
97324
+
Gly
GCC
[ENA]
¡û
>W131242981
CAOS01000009
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
98624
98698
+
Gly
GCC
[ENA]
¡û
>W131219093
ATYG01000019
Bacillota
Carboxydothermus ferrireducens DSM 11255 [ATYG]
46893
46967
+
Gly
GCC
[ENA]
¡û
>WENV180014291
FPIC01148852
[FPIC] soil metagenome; Soil
92
163
+
Gly
GCC
[ENA]
¢þ
>WENV180263729
OBEQ011501181
[OBEQ] groundwater metagenome; groundwater
2979
3053
+
Gly
GCC
[ENA]
¢þ
>WENV180833246
ODKC01021885
[ODKC] human metagenome; G_DNA_Supragingival plaque
471
397
-
Gly
GCC
[ENA]
¢þ
>W141085091
AURB01000028
Bacillota
Alicyclobacillus acidoterrestris ATCC 49025 [AURB]
5719
5648
-
Gly
GCC
[ENA]
¡û
>W141085121
AURB01000112
Bacillota
Alicyclobacillus acidoterrestris ATCC 49025 [AURB]
7426
7352
-
Gly
GCC
[ENA]
¡û
>W141085134
AURB01000141
Bacillota
Alicyclobacillus acidoterrestris ATCC 49025 [AURB]
7535
7461
-
Gly
GCC
[ENA]
¡û
>W141085136
AURB01000158
Bacillota
Alicyclobacillus acidoterrestris ATCC 49025 [AURB]
11796
11722
-
Gly
GCC
[ENA]
¡û
>W141085171
AURB01000185
Bacillota
Alicyclobacillus acidoterrestris ATCC 49025 [AURB]
9644
9570
-
Gly
GCC
[ENA]
¡û
>W141085195
AURB01000190
Bacillota
Alicyclobacillus acidoterrestris ATCC 49025 [AURB]
803
877
+
Gly
GCC
[ENA]
¡û
>WENV181051140
ODYD01208872
[ODYD] human metagenome; G_DNA_Supragingival plaque
63
137
+
Gly
GCC
[ENA]
¢þ
>W141167350
AXUD01000001
Bacillota
[Eubacterium] brachy ATCC 33089 [AXUD]
37818
37744
-
Gly
GCC
[ENA]
¡û
>WENV181864217
OGWU01000001
[OGWU] human gut metagenome; faeces
159963
160037
+
Gly
GCC
[ENA]
¢þ
>W141241231
CAHC01000012
Bacillota
Kallipyga massiliensis ph2 [CAHC]
226776
226705
-
Gly
GCC
[ENA]
¡û
>WENV182641781
OJLK01000521
[OJLK] metagenome; surface
22
96
+
Gly
GCC
[ENA]
¢þ
>C08004092
CP000860
Bacillota
Candidatus Desulforudis audaxviator MP104C [CP000860]
2077605
2077679
+
Gly
GCC
[Ensembl]
¡û
>WENV170644507
JMBW01021753
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
140
66
-
Gly
GCC
[ENA]
¢þ
>WENV170644595
JMBW01037222
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
26
100
+
Gly
GCC
[ENA]
¢þ
>WENV170674989
LCWZ01000298
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
926
1000
+
Gly
GCC
[ENA]
¢þ
>WENV170675001
LCWZ01000440
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
1812
1738
-
Gly
GCC
[ENA]
¢þ
>C181038559
CP019652
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430; ERIC_II [CP019652]
3704909
3704835
-
Gly
GCC
-
¡û
>C181166384
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
1495646
1495720
+
Gly
GCC
-
¡û
>C181166393
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
1599787
1599861
+
Gly
GCC
-
¡û
>C181166410
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
2218171
2218245
+
Gly
GCC
-
¡û
>C181166437
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
251968
251894
-
Gly
GCC
-
¡û
>C191151675
CP036487
Bacillota
Thermoactinomyces vulgaris CDF [CP036487]
1408563
1408637
+
Gly
GCC
-
¡û
>C191151707
CP036487
Bacillota
Thermoactinomyces vulgaris CDF [CP036487]
707098
707024
-
Gly
GCC
-
¡û
>C191151715
CP036487
Bacillota
Thermoactinomyces vulgaris CDF [CP036487]
706421
706347
-
Gly
GCC
-
¡û
>W141557823
JHVL01000020
Bacillota
Clostridiisalibacter paucivorans DSM 22131 [JHVL]
39244
39318
+
Gly
GCC
[ENA]
¡û
>W09105149
AAOP01000009
Bacillota
Desulforamulus reducens MI-1 [AAOP]
42961
43035
+
Gly
GCC
[ENA]
¡û
>W09105192
AAOP01000081
Bacillota
Desulforamulus reducens MI-1 [AAOP]
665
591
-
Gly
GCC
[ENA]
¡û
>W141702104
JMLG01000003
Bacillota
Desulfofundulus thermocisternus DSM 10259 [JMLG]
168186
168112
-
Gly
GCC
[ENA]
¡û
>W141754294
JNVM01000001
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
164151
164077
-
Gly
GCC
[ENA]
¡û
>W141754295
JNVM01000001
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
164014
163940
-
Gly
GCC
[ENA]
¡û
>W141754325
JNVM01000020
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
134958
134884
-
Gly
GCC
[ENA]
¡û
>W141754339
JNVM01000025
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
37728
37654
-
Gly
GCC
[ENA]
¡û
>W141754355
JNVM01000042
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
940
1014
+
Gly
GCC
[ENA]
¡û
>W1910004746
AWQQ01000027
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
67229
67155
-
Gly
GCC
[ENA]
¡û
>W1910004755
AWQQ01000042
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
17831
17905
+
Gly
GCC
[ENA]
¡û
>W1910004758
AWQQ01000042
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
18886
18960
+
Gly
GCC
[ENA]
¡û
>W1910004760
AWQQ01000042
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
20140
20214
+
Gly
GCC
[ENA]
¡û
>W1910004966
AWVY01000037
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
42174
42100
-
Gly
GCC
[ENA]
¡û
>W1910004968
AWVY01000037
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
40861
40787
-
Gly
GCC
[ENA]
¡û
>W1910004988
AWVY01000056
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
33363
33289
-
Gly
GCC
[ENA]
¡û
>W1910373607
FUHM01000001
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
162501
162575
+
Gly
GCC
[ENA]
¡û
>W1910373620
FUHM01000002
Bacillota
Anaerosalibacter sp. Marseille-P3206 [FUHM]
1132
1206
+
Gly
GCC
[ENA]
¡û
>W1910777276
MPDK01000003
Bacillota
Sulfoacidibacillus thermotolerans Y002 [MPDK]
37511
37585
+
Gly
GCC
[ENA]
¡û
>W1910831968
MYFO01000015
Bacillota
Paenibacillus athensensis MEC069 [MYFO]
58181
58107
-
Gly
GCC
[ENA]
¡û
>W1910831990
MYFO01000018
Bacillota
Paenibacillus athensensis MEC069 [MYFO]
4228
4302
+
Gly
GCC
[ENA]
¡û
>W1910832006
MYFO01000022
Bacillota
Paenibacillus athensensis MEC069 [MYFO]
91177
91103
-
Gly
GCC
[ENA]
¡û
>W1911137467
NOWF01000003
Bacillota
Paludifilum halophilum DSM 102817 [NOWF]
161033
160959
-
Gly
GCC
[ENA]
¡û
>W1911137488
NOWF01000009
Bacillota
Paludifilum halophilum DSM 102817 [NOWF]
172399
172325
-
Gly
GCC
[ENA]
¡û
>W1810402786
PYHP01000025
Bacillota
Paenibacillus elgii AC13 [PYHP]
859
933
+
Gly
GCC
[ENA]
¡û
>W1810402806
PYHP01000036
Bacillota
Paenibacillus elgii AC13 [PYHP]
32267
32193
-
Gly
GCC
[ENA]
¡û
>W1810402807
PYHP01000036
Bacillota
Paenibacillus elgii AC13 [PYHP]
32130
32056
-
Gly
GCC
[ENA]
¡û
>W1810402826
PYHP01000040
Bacillota
Paenibacillus elgii AC13 [PYHP]
39678
39604
-
Gly
GCC
[ENA]
¡û
>W1810402846
PYHP01000080
Bacillota
Paenibacillus elgii AC13 [PYHP]
90251
90177
-
Gly
GCC
[ENA]
¡û
>C10113252
CP002028
Bacillota
Thermincola potens JR [CP002028]
1103808
1103882
+
Gly
GCC
[Ensembl]
¡û
>C10113265
CP002028
Bacillota
Thermincola potens JR [CP002028]
2665580
2665506
-
Gly
GCC
[Ensembl]
¡û
>W1510725173
CXYV01000002
Bacillota
Kallipyga gabonensis GM4 [CXYV]
1220467
1220396
-
Gly
GCC
[ENA]
¡û
>W1511706095
LGTE01000001
Bacillota
Thermincola ferriacetica Z-0001 [LGTE]
20867
20941
+
Gly
GCC
[ENA]
¡û
>W1511706122
LGTE01000011
Bacillota
Thermincola ferriacetica Z-0001 [LGTE]
88543
88469
-
Gly
GCC
[ENA]
¡û
>W11163434
AFHT01000100
Bacillota
Desmospora sp. 8437 [AFHT]
798
872
+
Gly
GCC
[ENA]
¡û
>W121111530
ALJM01000028
Bacillota
Peptostreptococcaceae bacterium AS15 AS15 [ALJM]
364
438
+
Gly
GCC
[ENA]
¡û
>W121112577
ALNK01000029
Bacillota
Peptoanaerobacter stomatis OBRC8 [ALNK]
1042
1116
+
Gly
GCC
[ENA]
¡û
>W1610067195
BCQI01000012
Bacillota
Alicyclobacillus acidiphilus NBRC 100859 [BCQI]
6579
6505
-
Gly
GCC
[ENA]
¡û
>W1610067199
BCQI01000013
Bacillota
Alicyclobacillus acidiphilus NBRC 100859 [BCQI]
77464
77390
-
Gly
GCC
[ENA]
¡û
>W1610067212
BCQI01000035
Bacillota
Alicyclobacillus acidiphilus NBRC 100859 [BCQI]
30854
30780
-
Gly
GCC
[ENA]
¡û
>W1610614102
LGGS01000160
Bacillota
Pelotomaculum thermopropionicum [LGGS]
1641
1715
+
Gly
GCC
[ENA]
¡û
>W1610959124
LVKL01000013
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
65190
65264
+
Gly
GCC
[ENA]
¡û
>W1610959133
LVKL01000072
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
21350
21424
+
Gly
GCC
[ENA]
¡û
>W1710064568
BCQI01000012
Bacillota
Alicyclobacillus acidiphilus NBRC 100859 [BCQI]
6579
6505
-
Gly
GCC
[ENA]
¡û
>W1710064572
BCQI01000013
Bacillota
Alicyclobacillus acidiphilus NBRC 100859 [BCQI]
77464
77390
-
Gly
GCC
[ENA]
¡û
>W1710064585
BCQI01000035
Bacillota
Alicyclobacillus acidiphilus NBRC 100859 [BCQI]
30854
30780
-
Gly
GCC
[ENA]
¡û
>W1710518323
FNDY01000009
Bacillota
Paenibacillus naphthalenovorans [FNDY]
182416
182342
-
Gly
GCC
[ENA]
¡û
>W1710518353
FNDY01000030
Bacillota
Paenibacillus naphthalenovorans [FNDY]
21558
21632
+
Gly
GCC
[ENA]
¡û
>W1710518374
FNDY01000037
Bacillota
Paenibacillus naphthalenovorans [FNDY]
41786
41712
-
Gly
GCC
[ENA]
¡û
>W1710518384
FNDY01000045
Bacillota
Paenibacillus naphthalenovorans [FNDY]
30678
30604
-
Gly
GCC
[ENA]
¡û
>W1710518385
FNDY01000045
Bacillota
Paenibacillus naphthalenovorans [FNDY]
30422
30348
-
Gly
GCC
[ENA]
¡û
>W1710523796
FNIF01000043
Bacillota
Paenibacillus sp. yr247 [FNIF]
18071
18000
-
Gly
GCC
[ENA]
¡û
>W1710529890
FNOJ01000001
Bacillota
Alicyclobacillus hesperidum [FNOJ]
158762
158688
-
Gly
GCC
[ENA]
¡û
>W1710529923
FNOJ01000013
Bacillota
Alicyclobacillus hesperidum [FNOJ]
1772
1846
+
Gly
GCC
[ENA]
¡û
>W1710529954
FNOJ01000020
Bacillota
Alicyclobacillus hesperidum [FNOJ]
10265
10191
-
Gly
GCC
[ENA]
¡û
>W1710565974
FORR01000002
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
93863
93789
-
Gly
GCC
[ENA]
¡û
>W1710566001
FORR01000018
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
22574
22500
-
Gly
GCC
[ENA]
¡û
>W1710566013
FORR01000019
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
70743
70669
-
Gly
GCC
[ENA]
¡û
>W1710566029
FORR01000026
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
40130
40056
-
Gly
GCC
[ENA]
¡û
>W1710566035
FORR01000043
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
201
275
+
Gly
GCC
[ENA]
¡û
>W1710588588
FQZM01000047
Bacillota
Desulfofundulus thermosubterraneus DSM 16057 [FQZM]
15778
15852
+
Gly
GCC
[ENA]
¡û
>W1710589073
FQZV01000039
Bacillota
Geosporobacter subterraneus DSM 17957 [FQZV]
21458
21532
+
Gly
GCC
[ENA]
¡û
>W1710604131
FUZS01000023
Bacillota
[Eubacterium] yurii [FUZS]
35894
35820
-
Gly
GCC
[ENA]
¡û
>W1710735185
LGGS01000160
Bacillota
Pelotomaculum thermopropionicum [LGGS]
1641
1715
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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