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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.399881 (78 seq.)
>W1711093169
LTET01000143
Bacillota
Lactobacillus sp. HMSC066G01 [LTET]
16805
16878
+
Glu
TTC
[ENA]
¡û
>W1711093184
LTET01000170
Bacillota
Lactobacillus sp. HMSC066G01 [LTET]
13599
13526
-
Glu
TTC
[ENA]
¡û
>W1711098139
LTJI01000082
Bacillota
Lactobacillus sp. HMSC068B07 [LTJI]
2198
2271
+
Glu
TTC
[ENA]
¡û
>W1711098156
LTJI01000102
Bacillota
Lactobacillus sp. HMSC068B07 [LTJI]
1229
1302
+
Glu
TTC
[ENA]
¡û
>W1711120582
LUGK01000036
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
99
28
-
Glu
TTC
[ENA]
¡û
>W1711120598
LUGK01000042
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
906
835
-
Glu
TTC
[ENA]
¡û
>W1711120624
LUGK01000095
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
100
27
-
Glu
TTC
[ENA]
¡û
>W1711120632
LUGK01000120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
453
526
+
Glu
TTC
[ENA]
¡û
>W1711588910
MODS01000007
Bacillota
Lacticaseibacillus casei [MODS]
243
170
-
Glu
TTC
[ENA]
¡û
>W1711588937
MODS01000095
Bacillota
Lacticaseibacillus casei [MODS]
2272
2345
+
Glu
TTC
[ENA]
¡û
>W1711944145
NBEM01000014
Bacillota
Ligilactobacillus salivarius [NBEM]
37223
37148
-
Glu
TTC
[ENA]
¡û
>W1711944330
NBEQ01000021
Bacillota
Ligilactobacillus salivarius [NBEQ]
33871
33796
-
Glu
TTC
[ENA]
¡û
>W1711944335
NBEQ01000029
Bacillota
Ligilactobacillus salivarius [NBEQ]
70340
70265
-
Glu
TTC
[ENA]
¡û
>W1711944354
NBEQ01000082
Bacillota
Ligilactobacillus salivarius [NBEQ]
75
1
-
Glu
TTC
[ENA]
¡û
>W1711999839
NDXH01000053
Bacillota
Lacticaseibacillus paracasei [NDXH]
1397
1470
+
Glu
TTC
[ENA]
¡û
>W1711999854
NDXH01000079
Bacillota
Lacticaseibacillus paracasei [NDXH]
2512
2585
+
Glu
TTC
[ENA]
¡û
>C171074151
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
3562
3635
+
Glu
TTC
-
¡û
>C171074160
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
51217
51290
+
Glu
TTC
-
¡û
>C171074167
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
172928
172999
+
Glu
TTC
-
¡û
>C171074196
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
1897502
1897573
+
Glu
TTC
-
¡û
>C171074209
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
1951529
1951602
+
Glu
TTC
-
¡û
>C171074234
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
738632
738559
-
Glu
TTC
-
¡û
>C171075754
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
1173791
1173864
+
Glu
TTC
-
¡û
>C171075781
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
1883528
1883457
-
Glu
TTC
-
¡û
>C171075794
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
1829743
1829670
-
Glu
TTC
-
¡û
>C171075803
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
1797233
1797160
-
Glu
TTC
-
¡û
>C171075810
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
1696900
1696829
-
Glu
TTC
-
¡û
>C171075845
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
58219
58148
-
Glu
TTC
-
¡û
>C171075858
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
3040
2967
-
Glu
TTC
-
¡û
>WENV180176138
OAWC01031248
[OAWC] human gut metagenome; faeces
325
253
-
Glu
TTC
[ENA]
¢þ
>WENV180432173
OBWI01000396
[OBWI] human gut metagenome; faeces
16355
16281
-
Glu
TTC
[ENA]
¢þ
>WENV180473071
OBYQ01030931
[OBYQ] human gut metagenome; faeces
246
174
-
Glu
TTC
[ENA]
¢þ
>WENV181394883
OFRZ01001464
[OFRZ] human gut metagenome; human gut
316
388
+
Glu
TTC
[ENA]
¢þ
>WENV181728203
OGQA01025691
[OGQA] human gut metagenome; faeces
195
122
-
Glu
TTC
[ENA]
¢þ
>WENV181745934
OGQN01000064
[OGQN] human gut metagenome; faeces
316
389
+
Glu
TTC
[ENA]
¢þ
>W09101738
AAGQ01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
20865
20936
+
Glu
TTC
[ENA]
¡û
>W09101749
AAGQ01000015
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
15510
15437
-
Glu
TTC
[ENA]
¡û
>W09101769
AAGQ01000045
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
8506
8579
+
Glu
TTC
[ENA]
¡û
>W09101782
AAGQ01000078
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
2907
2834
-
Glu
TTC
[ENA]
¡û
>W09110968
ABWJ01000037
Bacillota
Lacticaseibacillus rhamnosus HN001 [ABWJ]
2481
2408
-
Glu
TTC
[ENA]
¡û
>W09110982
ABWJ01000048
Bacillota
Lacticaseibacillus rhamnosus HN001 [ABWJ]
1195
1268
+
Glu
TTC
[ENA]
¡û
>W09123456
ACGY01000123
Bacillota
Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 [ACGY]
2209
2282
+
Glu
TTC
[ENA]
¡û
>W09123483
ACGY01000152
Bacillota
Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 [ACGY]
1353
1426
+
Glu
TTC
[ENA]
¡û
>W141730646
JNIN01000001
Bacillota
Lachnospiraceae bacterium AC2012 [JNIN]
1275
1346
+
Glu
TTC
[ENA]
¡û
>W141730671
JNIN01000001
Bacillota
Lachnospiraceae bacterium AC2012 [JNIN]
2064184
2064255
+
Glu
TTC
[ENA]
¡û
>W141730681
JNIN01000001
Bacillota
Lachnospiraceae bacterium AC2012 [JNIN]
1615715
1615644
-
Glu
TTC
[ENA]
¡û
>W141733363
JNKT01000010
Bacillota
Lachnospiraceae bacterium FD2005 [JNKT]
412
483
+
Glu
TTC
[ENA]
¡û
>SRA1035397
SRR035089.297718
454 Sequencing (SRP001810)
82
8
-
Glu
TTC
[SRA]
>W121007306
AFZY01000068
Bacillota
Lacticaseibacillus rhamnosus ATCC 21052 [AFZY]
2515
2442
-
Glu
TTC
[ENA]
¡û
>W121007329
AFZY01000122
Bacillota
Lacticaseibacillus rhamnosus ATCC 21052 [AFZY]
214
141
-
Glu
TTC
[ENA]
¡û
>W121008470
AGCJ01000076
Bacillota
Anaeroglobus geminatus F0357 [AGCJ]
6115
6189
+
Glu
TTC
[ENA]
¡û
>W1610044340
BBAM01000005
Bacillota
Lacticaseibacillus nasuensis JCM 17158 [BBAM]
107
180
+
Glu
TTC
[ENA]
¡û
>W1610044377
BBAM01000110
Bacillota
Lacticaseibacillus nasuensis JCM 17158 [BBAM]
3294
3221
-
Glu
TTC
[ENA]
¡û
>W1610044388
BBAM01000180
Bacillota
Lacticaseibacillus nasuensis JCM 17158 [BBAM]
543
471
-
Glu
TTC
[ENA]
¡û
>W1610529557
JQCE01000030
Bacillota
Lacticaseibacillus saniviri JCM 17471 = DSM 24301 [JQCE]
1573
1646
+
Glu
TTC
[ENA]
¡û
>W1610529561
JQCE01000032
Bacillota
Lacticaseibacillus saniviri JCM 17471 = DSM 24301 [JQCE]
87310
87238
-
Glu
TTC
[ENA]
¡û
>W1610529589
JQCE01000073
Bacillota
Lacticaseibacillus saniviri JCM 17471 = DSM 24301 [JQCE]
10669
10596
-
Glu
TTC
[ENA]
¡û
>W1610544497
JTIP01000006
Bacillota
Lacticaseibacillus rhamnosus [JTIP]
70769
70842
+
Glu
TTC
[ENA]
¡û
>W1610544519
JTIP01000066
Bacillota
Lacticaseibacillus rhamnosus [JTIP]
363
436
+
Glu
TTC
[ENA]
¡û
>W1610931779
LUGK01000036
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
99
28
-
Glu
TTC
[ENA]
¡û
>W1610931795
LUGK01000042
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
906
835
-
Glu
TTC
[ENA]
¡û
>W1610931821
LUGK01000095
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
100
27
-
Glu
TTC
[ENA]
¡û
>W1610931829
LUGK01000120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
453
526
+
Glu
TTC
[ENA]
¡û
>W1710041500
BBAM01000005
Bacillota
Lacticaseibacillus nasuensis JCM 17158 [BBAM]
107
180
+
Glu
TTC
[ENA]
¡û
>W1710041537
BBAM01000110
Bacillota
Lacticaseibacillus nasuensis JCM 17158 [BBAM]
3294
3221
-
Glu
TTC
[ENA]
¡û
>W1710041548
BBAM01000180
Bacillota
Lacticaseibacillus nasuensis JCM 17158 [BBAM]
543
471
-
Glu
TTC
[ENA]
¡û
>W1710547097
FOCR01000004
Bacillota
Lysinibacillus fusiformis SG45 [FOCR]
807
734
-
Glu
TTC
[ENA]
¡û
>W1710547107
FOCR01000018
Bacillota
Lysinibacillus fusiformis SG45 [FOCR]
70671
70597
-
Glu
TTC
[ENA]
¡û
>W1710547143
FOCR01000026
Bacillota
Lysinibacillus fusiformis SG45 [FOCR]
12739
12810
+
Glu
TTC
[ENA]
¡û
>W1710547146
FOCR01000032
Bacillota
Lysinibacillus fusiformis SG45 [FOCR]
2442
2516
+
Glu
TTC
[ENA]
¡û
>W1710576046
FOZT01000005
Bacillota
Lysinibacillus fusiformis BC-43 [FOZT]
243720
243646
-
Glu
TTC
[ENA]
¡û
>W1710576052
FOZT01000005
Bacillota
Lysinibacillus fusiformis BC-43 [FOZT]
808
735
-
Glu
TTC
[ENA]
¡û
>W1710576073
FOZT01000024
Bacillota
Lysinibacillus fusiformis BC-43 [FOZT]
70727
70653
-
Glu
TTC
[ENA]
¡û
>W1710576088
FOZT01000025
Bacillota
Lysinibacillus fusiformis BC-43 [FOZT]
21210
21281
+
Glu
TTC
[ENA]
¡û
>W1710631147
JQCE01000030
Bacillota
Lacticaseibacillus saniviri JCM 17471 = DSM 24301 [JQCE]
1573
1646
+
Glu
TTC
[ENA]
¡û
>W1710631179
JQCE01000073
Bacillota
Lacticaseibacillus saniviri JCM 17471 = DSM 24301 [JQCE]
10669
10596
-
Glu
TTC
[ENA]
¡û
>W1710647628
JTIP01000006
Bacillota
Lacticaseibacillus rhamnosus [JTIP]
70769
70842
+
Glu
TTC
[ENA]
¡û
>W1710647650
JTIP01000066
Bacillota
Lacticaseibacillus rhamnosus [JTIP]
363
436
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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