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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400063 (71 seq.)
>W1710909554
LNQO01000019
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
99550
99622
+
Val
TAC
[ENA]
¡û
>W1711221501
LXRE01000021
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
103235
103309
+
Val
TAC
[ENA]
¡û
>W1711281617
LZMI01000059
Actinomycetota
Gordonia sp. 852002-51296_SCH5728562-b [LZMI]
71102
71174
+
Val
TAC
[ENA]
¡û
>W1711281906
LZMO01000122
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
3514
3440
-
Val
TAC
[ENA]
¡û
>W1711281942
LZMP01000010
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
75510
75582
+
Val
TAC
[ENA]
¡û
>W1711286485
LZTC01000090
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
44466
44538
+
Val
TAC
[ENA]
¡û
>W1711286492
LZTD01000006
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
44287
44359
+
Val
TAC
[ENA]
¡û
>W1711286570
LZTE01000061
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
44138
44210
+
Val
TAC
[ENA]
¡û
>W1711492298
MKKG01000088
Actinomycetota
Gordonia sp. CNJ-863 [MKKG]
22910
22836
-
Val
TAC
[ENA]
¡û
>W1711776907
MVKV01000006
Actinomycetota
Gordonia sp. IITR100 [MVKV]
26235
26163
-
Val
TAC
[ENA]
¡û
>W1711784515
MVPX01000286
Actinomycetota
Gordonia sp. i37 [MVPX]
2971
3045
+
Val
TAC
[ENA]
¡û
>W1712061717
NGFO01000036
Actinomycetota
Gordonia lacunae [NGFO]
7108
7180
+
Val
TAC
[ENA]
¡û
>W131109100
APHK01000579
Actinomycetota
Gordonia sp. NB41Y NB4-1Y [APHK]
1636
1710
+
Val
TAC
[ENA]
¡û
>W131156538
AQPW01000003
Actinomycetota
Gordonia terrae C-6 [AQPW]
49092
49166
+
Val
TAC
[ENA]
¡û
>W131186286
ARVZ01000001
Actinomycetota
Gordonia polyisoprenivorans HW436 [ARVZ]
1982746
1982672
-
Val
TAC
[ENA]
¡û
>W131229931
AUHE01000008
Actinomycetota
Gordonia shandongensis DSM 45094 [AUHE]
91822
91750
-
Val
TAC
[ENA]
¡û
>W131239464
BANR01000058
Actinomycetota
Gordonia aichiensis NBRC 108223 [BANR]
108891
108819
-
Val
TAC
[ENA]
¡û
>W131239470
BANS01000005
Actinomycetota
Gordonia amicalis NBRC 100051 [BANS]
37616
37542
-
Val
TAC
[ENA]
¡û
>W131239573
BANU01000006
Actinomycetota
Gordonia sihwensis NBRC 108236 [BANU]
72080
72152
+
Val
TAC
[ENA]
¡û
>W131239718
BANX01000025
Actinomycetota
Gordonia soli NBRC 108243 [BANX]
10990
11064
+
Val
TAC
[ENA]
¡û
>W131240927
BAOQ01000070
Actinomycetota
Gordonia paraffinivorans NBRC 108238 [BAOQ]
1962
1888
-
Val
TAC
[ENA]
¡û
>W141144193
AWTB01000117
Actinomycetota
Gordonia amicalis CCMA-559 [AWTB]
161075
161149
+
Val
TAC
[ENA]
¡û
>W141194578
AYTE01000001
Actinomycetota
Williamsia sp. D3 [AYTE]
111128
111054
-
Val
TAC
[ENA]
¡û
>W141200059
AYXO01000056
Actinomycetota
Gordonia alkanivorans CGMCC 6845 [AYXO]
160026
160100
+
Val
TAC
[ENA]
¡û
>W141256050
CBVP010000204
Actinomycetota
Gordonia alkanivorans s104 [CBVP]
4871
4945
+
Val
TAC
[ENA]
¡û
>WENV170566288
FKKE01013708
[FKKE] freshwater metagenome; freshwater
1636
1708
+
Val
TAC
[ENA]
¢þ
>W09109089
ABTV01000013
Actinomycetota
Gordonia bronchialis DSM 43247 [ABTV]
3895
3969
+
Val
TAC
[ENA]
¡û
>C181117217
CP025435
Actinomycetota
Gordonia sp. YC-JH1 [CP025435]
2222438
2222510
+
Val
TAC
-
¡û
>C181181623
CP029604
Actinomycetota
Gordonia terrae NRRL B-16283 [CP029604]
3565875
3565949
+
Val
TAC
-
¡û
>C191050824
CP027114
Actinomycetota
Gordonia alkanivorans YC-RL2 [CP027114]
2649274
2649200
-
Val
TAC
-
¡û
>C191117125
CP033972
Actinomycetota
Gordonia insulae MMS17-SY073 [CP033972]
143470
143542
+
Val
TAC
-
¡û
>W141756190
JNXA01000003
Actinomycetota
Gordonia terrae [JNXA]
253497
253571
+
Val
TAC
[ENA]
¡û
>W1910611742
LFLR01000016
Actinomycetota
Gordonia paraffinivorans MTZ 041 [LFLR]
1107
1033
-
Val
TAC
[ENA]
¡û
>W1911180181
NQOE01000001
Actinomycetota
Gordonia polyisoprenivorans herm_1 [NQOE]
1298332
1298405
+
Val
TAC
[ENA]
¡û
>W1810189528
PKJC01000003
Actinomycetota
Gordonia terrae UMB0777 [PKJC]
203888
203814
-
Val
TAC
[ENA]
¡û
>C10107071
CP001802
Actinomycetota
Gordonia bronchialis DSM 43247 [CP001802]
3330493
3330567
+
Val
TAC
[Ensembl]
¡û
>W1511540000
JZDP01000023
Actinomycetota
Gordonia sihwensis no. 9 [JZDP]
32943
33015
+
Val
TAC
[ENA]
¡û
>W11148967
AEUD01000004
Actinomycetota
Gordonia neofelifaecis NRRL B-59395 [AEUD]
25326
25400
+
Val
TAC
[ENA]
¡û
>W1511640294
LDTZ01000015
Actinomycetota
Gordonia jacobaea mv1 [LDTZ]
288486
288560
+
Val
TAC
[ENA]
¡û
>W11184652
BACI01000002
Actinomycetota
Gordonia alkanivorans NBRC 16433 [BACI]
74379
74305
-
Val
TAC
[ENA]
¡û
>C121006207
CP003119
Actinomycetota
Gordonia polyisoprenivorans VH2 [CP003119]
3258131
3258205
+
Val
TAC
[Ensembl]
¡û
>C161037629
CP011853
Actinomycetota
Gordonia phthalatica QH-11 [CP011853]
2765469
2765397
-
Val
TAC
[Ensembl]
¡û
>C161100047
CP016594
Actinomycetota
Gordonia terrae 3612 [CP016594]
3563072
3563146
+
Val
TAC
-
¡û
>W1610050706
BBGD01000247
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 = JCM 10675 [BBGD]
3079
3005
-
Val
TAC
[ENA]
¡û
>W1610062121
BCNF01000002
Actinomycetota
Gordonia desulfuricans NBRC 100010 [BCNF]
15761
15835
+
Val
TAC
[ENA]
¡û
>W121123649
BAED01000040
Actinomycetota
Gordonia amarae NBRC 15530 [BAED]
160124
160198
+
Val
TAC
[ENA]
¡û
>W121123909
BAEI01000072
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 [BAEI]
57525
57451
-
Val
TAC
[ENA]
¡û
>W121124277
BAFB01000065
Actinomycetota
Gordonia otitidis NBRC 100426 [BAFB]
60217
60145
-
Val
TAC
[ENA]
¡û
>W121124330
BAFC01000072
Actinomycetota
Gordonia sputi NBRC 100414 [BAFC]
15438
15364
-
Val
TAC
[ENA]
¡û
>W121124394
BAFD01000111
Actinomycetota
Gordonia terrae NBRC 100016 [BAFD]
100662
100736
+
Val
TAC
[ENA]
¡û
>W121126562
BAHB01000097
Actinomycetota
Gordonia rubripertincta NBRC 101908 [BAHB]
83145
83219
+
Val
TAC
[ENA]
¡û
>W121126592
BAHC01000105
Actinomycetota
Gordonia rhizosphera NBRC 16068 [BAHC]
5496
5568
+
Val
TAC
[ENA]
¡û
>W121126700
BAHE01000032
Actinomycetota
Gordonia namibiensis NBRC 108229 [BAHE]
47617
47691
+
Val
TAC
[ENA]
¡û
>C131001580
CP002907
Actinomycetota
Gordonia sp. KTR9 [CP002907]
3580236
3580310
+
Val
TAC
[Ensembl]
¡û
>W1610515322
FMAX01000019
Actinomycetota
Gordonia sp. v-85 [FMAX]
99550
99622
+
Val
TAC
[ENA]
¡û
>W1610527624
JPYZ01000006
Actinomycetota
Gordonia sp. QH-12 [JPYZ]
88446
88520
+
Val
TAC
[ENA]
¡û
>W1610638780
LIYC01000032
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
49070
49144
+
Val
TAC
[ENA]
¡û
>W1610767913
LNQO01000019
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
99550
99622
+
Val
TAC
[ENA]
¡û
>W1611006019
LXRE01000021
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
103235
103309
+
Val
TAC
[ENA]
¡û
>W1611040902
LZMI01000059
Actinomycetota
Gordonia sp. 852002-51296_SCH5728562-b [LZMI]
71102
71174
+
Val
TAC
[ENA]
¡û
>W1611041191
LZMO01000122
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
3514
3440
-
Val
TAC
[ENA]
¡û
>W1611041227
LZMP01000010
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
75510
75582
+
Val
TAC
[ENA]
¡û
>W1611044046
LZTC01000090
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
44466
44538
+
Val
TAC
[ENA]
¡û
>W1611044053
LZTD01000006
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
44287
44359
+
Val
TAC
[ENA]
¡û
>W1611044131
LZTE01000061
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
44138
44210
+
Val
TAC
[ENA]
¡û
>W1710047105
BBGD01000247
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 = JCM 10675 [BBGD]
3079
3005
-
Val
TAC
[ENA]
¡û
>W1710059662
BCNF01000002
Actinomycetota
Gordonia desulfuricans NBRC 100010 [BCNF]
15761
15835
+
Val
TAC
[ENA]
¡û
>W1710501012
FMAX01000019
Actinomycetota
Gordonia sp. v-85 [FMAX]
99550
99622
+
Val
TAC
[ENA]
¡û
>W1710527889
FNLM01000034
Actinomycetota
Gordonia westfalica [FNLM]
1153477
1153551
+
Val
TAC
[ENA]
¡û
>W1710629126
JPYZ01000006
Actinomycetota
Gordonia sp. QH-12 [JPYZ]
88446
88520
+
Val
TAC
[ENA]
¡û
>W1710774611
LIYC01000032
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
49070
49144
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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