This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400103 (64 seq.)
>W1710785569
LJHZ01000009
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
12597
12671
+
Thr
TGT
[ENA]
¡û
>W1710856817
LLZQ01000020
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
66008
66082
+
Thr
TGT
[ENA]
¡û
>W1710882254
LMTR01000081
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
3652
3726
+
Thr
TGT
[ENA]
¡û
>W1710991254
LPXN01000135
Alphaproteobacteria
Oceanibaculum pacificum [LPXN]
17839
17765
-
Thr
TGT
[ENA]
¡û
>W1711387052
MEGD01000027
Alphaproteobacteria
Novosphingobium sp. SCN 66-18 [MEGD]
5275
5201
-
Thr
TGT
[ENA]
¡û
>W1711434827
MINO01000031
Alphaproteobacteria
Sphingobium phenoxybenzoativorans [MINO]
24605
24679
+
Thr
TGT
[ENA]
¡û
>W1711628154
MPOB01000005
Alphaproteobacteria
Oceanibaculum nanhaiense L54-1-50 [MPOB]
377286
377212
-
Thr
TGT
[ENA]
¡û
>W1711793156
MWLJ01000047
Alphaproteobacteria
Rhodomicrobium vannielii [MWLJ]
111340
111266
-
Thr
TGT
[ENA]
¡û
>W1711793201
MWLK01000036
Alphaproteobacteria
Rhodomicrobium sp. R_RK_3 vannielii [MWLK]
111345
111271
-
Thr
TGT
[ENA]
¡û
>C171033103
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
2883220
2883146
-
Thr
TGT
-
¡û
>C171108892
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH [CP020538]
46112
46038
-
Thr
TGT
-
¡û
>C171117063
CP021181
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [CP021181]
4706568
4706494
-
Thr
TGT
-
¡û
>W131196607
ASTM01000174
Alphaproteobacteria
Sphingomonas sp. YL-JM2C [ASTM]
27718
27792
+
Thr
TGT
[ENA]
¡û
>W131045453
AMRL01000035
Alphaproteobacteria
Oceanibaculum indicum P24 [AMRL]
3125
3199
+
Thr
TGT
[ENA]
¡û
>W131160224
AQWK01000006
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
199215
199289
+
Thr
TGT
[ENA]
¡û
>C024949
CP000699
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [CP000699]
976105
976179
+
Thr
TGT
[Ensembl]
¡û
>WENV180020663
FTCZ01008043
[FTCZ] metagenome; soil
2271
2345
+
Thr
TGT
[ENA]
¢þ
>WENV180691443
OCZS010124535
[OCZS] soil metagenome; soil
812
883
+
Thr
TGT
[ENA]
¢þ
>W141078097
ATHO01000070
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
85540
85466
-
Thr
TGT
[ENA]
¡û
>W141090239
AUWY01000048
Alphaproteobacteria
Sphingobium ummariense RL-3 [AUWY]
94125
94199
+
Thr
TGT
[ENA]
¡û
>W141096534
AVFL01000020
Alphaproteobacteria
Skermanella stibiiresistens SB22 [AVFL]
3556
3630
+
Thr
TGT
[ENA]
¡û
>WENV181145484
OEHO01320787
[OEHO] metagenome; unknown
143
69
-
Thr
TGT
[ENA]
¢þ
>WENV181164995
OEIR01508571
[OEIR] soil metagenome; soil
84
158
+
Thr
TGT
[ENA]
¢þ
>WENV181223428
OFDC01014960
[OFDC] hot springs metagenome; Water
690
616
-
Thr
TGT
[ENA]
¢þ
>WENV181227141
OFDN01002255
[OFDN] hot springs metagenome; Water
7340
7266
-
Thr
TGT
[ENA]
¢þ
>WENV183731473
PJTT01000006
[PJTT] soil metagenome; Soil (2) enriched on wood chips
285947
285873
-
Thr
TGT
[ENA]
¢þ
>WENV183747842
PPFU01000519
[PPFU] hypolithon metagenome; Antarctic Hypolithon
35284
35210
-
Thr
TGT
[ENA]
¢þ
>WENV170011557
APMI01074155
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
878
804
-
Thr
TGT
[ENA]
¢þ
>WENV170713028
LNFM01022551
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1462
1388
-
Thr
TGT
[ENA]
¢þ
>W141452331
JFBW01000002
Alphaproteobacteria
Sphingomonas jaspsi DSM 18422 [JFBW]
1231201
1231127
-
Thr
TGT
[ENA]
¡û
>W141484898
JFYY01000017
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
29940
29866
-
Thr
TGT
[ENA]
¡û
>W141485002
JFZA02000023
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [JFZA]
165796
165722
-
Thr
TGT
[ENA]
¡û
>W141485420
JFZJ01000017
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JFZJ]
14977
14903
-
Thr
TGT
[ENA]
¡û
>W09106528
AAVK01000007
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [AAVK]
165247
165321
+
Thr
TGT
[ENA]
¡û
>C191170961
CP039695
Alphaproteobacteria
Novosphingobium sp. EMRT-2 [CP039695]
2682698
2682772
+
Thr
TGT
-
¡û
>W141713966
JMUB01000152
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [JMUB]
12966
13040
+
Thr
TGT
[ENA]
¡û
>W141726170
JNAC01000165
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
42843
42769
-
Thr
TGT
[ENA]
¡û
>W1910231939
FPEH01000011
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
591269
591343
+
Thr
TGT
[ENA]
¡û
>W1810195676
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
1076649
1076723
+
Thr
TGT
[ENA]
¡û
>W1810725214
QOCK01000001
Alphaproteobacteria
'Sphingomonas ginsengisoli' Hoang et al. 2012 KCTC 12630 [QOCK]
574371
574445
+
Thr
TGT
[ENA]
¡û
>W1810917819
QWDF01000001
Alphaproteobacteria
Sphingomonas mesophila SYSUP0001 [QWDF]
1558135
1558209
+
Thr
TGT
[ENA]
¡û
>W1510019737
BBXA01000020
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
151680
151606
-
Thr
TGT
[ENA]
¡û
>W10112707
ADFF01000012
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
14675
14601
-
Thr
TGT
[ENA]
¡û
>W11115934
ADFF01000012
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
14675
14601
-
Thr
TGT
[ENA]
¡û
>C11119016
CP002292
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [CP002292]
2998171
2998245
+
Thr
TGT
[Ensembl]
¡û
>W1511590545
LBHB01000003
Alphaproteobacteria
Aurantiacibacter luteus KA37 [LBHB]
155433
155359
-
Thr
TGT
[ENA]
¡û
>W11151082
AEWJ01000044
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
199120
199194
+
Thr
TGT
[ENA]
¡û
>W1511633055
LDES01000065
Alphaproteobacteria
Sphingomonas sp. Y57 [LDES]
81801
81727
-
Thr
TGT
[ENA]
¡û
>C161003409
CP005188
Alphaproteobacteria
Sphingobium sp. MI1205 [CP005188, CP005189]
2057892
2057966
+
Thr
TGT
[Ensembl]
¡û
>C161099959
CP016591
Alphaproteobacteria
Tsuneonella dongtanensis KCTC 22672 [CP016591]
1564635
1564561
-
Thr
TGT
[Ensembl]
¡û
>W1610026889
AVFK01000014
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
3459
3533
+
Thr
TGT
[ENA]
¡û
>W121034430
AHKO01000334
Alphaproteobacteria
Rhizorhabdus wittichii DP58 [AHKO]
356
430
+
Thr
TGT
[ENA]
¡û
>W1610041054
BANC01000059
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
80400
80474
+
Thr
TGT
[ENA]
¡û
>W1610076940
BCZD01000008
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
178637
178563
-
Thr
TGT
[ENA]
¡û
>W1610649375
LJHZ01000009
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
12597
12671
+
Thr
TGT
[ENA]
¡û
>W1610719198
LLZQ01000020
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
66008
66082
+
Thr
TGT
[ENA]
¡û
>W1610744180
LMTR01000081
Alphaproteobacteria
Hyphomicrobium sulfonivorans [LMTR]
3652
3726
+
Thr
TGT
[ENA]
¡û
>W1610845926
LPXN01000135
Alphaproteobacteria
Oceanibaculum pacificum [LPXN]
17839
17765
-
Thr
TGT
[ENA]
¡û
>W1611004957
LXQM01000003
Alphaproteobacteria
Croceibacterium salegens XY-R17 [LXQM]
133222
133296
+
Thr
TGT
[ENA]
¡û
>W1710023054
AVFK01000014
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
3459
3533
+
Thr
TGT
[ENA]
¡û
>W1710038252
BANC01000059
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
80400
80474
+
Thr
TGT
[ENA]
¡û
>W1710074629
BCZD01000008
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
178637
178563
-
Thr
TGT
[ENA]
¡û
>W1710584178
FQVJ01000001
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [FQVJ]
154481
154407
-
Thr
TGT
[ENA]
¡û
>W1710602765
FUYM01000014
Alphaproteobacteria
Rhizorhabdus histidinilytica [FUYM]
961
887
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK