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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400184 (31 seq.)
>W1711339831
MCAP01000059
Gammaproteobacteria
Salinicola sp. MIT1003 [MCAP]
158097
158171
+
Gln
CTG
[ENA]
¡û
>W1711688847
MSDO01000020
Gammaproteobacteria
Salinicola socius [MSDO]
74593
74667
+
Gln
CTG
[ENA]
¡û
>W1711688985
MSDQ01000011
Gammaproteobacteria
Chromohalobacter japonicus [MSDQ]
9393
9319
-
Gln
CTG
[ENA]
¡û
>W1712082138
NHOU01000031
Gammaproteobacteria
Salinicola salarius [NHOU]
9905
9979
+
Gln
CTG
[ENA]
¡û
>C171057403
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
3370456
3370530
+
Gln
CTG
-
¡û
>WENV170177212
CEOS01224255
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
823
749
-
Gln
CTG
[ENA]
¢þ
>WENV170373291
CETS01240150
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
274
348
+
Gln
CTG
[ENA]
¢þ
>WENV170436218
CEUT01030434
[CEUT] marine metagenome genome assembly TARA_125_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
99
173
+
Gln
CTG
[ENA]
¢þ
>WENV170520792
CEWF01012978
[CEWF] marine metagenome genome assembly TARA_122_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
624
550
-
Gln
CTG
[ENA]
¢þ
>WENV170822981
MDSY01049622
[MDSY] marine metagenome; seawater
351
425
+
Gln
CTG
[ENA]
¢þ
>WENV170930284
MDTG01165643
[MDTG] marine metagenome; seawater
2395
2469
+
Gln
CTG
[ENA]
¢þ
>C181084582
CP023559
Gammaproteobacteria
Salinicola tamaricis F01 [CP023559]
3433089
3433015
-
Gln
CTG
-
¡û
>C191005921
AP018933
Gammaproteobacteria
Zymobacter palmae IAM14233 [AP018933]
2384660
2384734
+
Gln
CTG
-
¡û
>W141557548
JHVG01000005
Gammaproteobacteria
Zymobacter palmae DSM 10491 [JHVG]
55931
55857
-
Gln
CTG
[ENA]
¡û
>W141562103
JHYY01000012
Gammaproteobacteria
Halotalea alkalilenta DSM 17697 [JHYY]
167908
167834
-
Gln
CTG
[ENA]
¡û
>W141754515
JNVT01000051
Gammaproteobacteria
Gammaproteobacteria bacterium MFB021 [JNVT]
93752
93678
-
Gln
CTG
[ENA]
¡û
>W1910237301
FPLA01000002
Gammaproteobacteria
Cobetia marina MM1IDA2H-1 [FPLA]
81352
81278
-
Gln
CTG
[ENA]
¡û
>W1810444081
PZJK01000015
Gammaproteobacteria
Salinicola sp. RZ23 [PZJK]
54791
54717
-
Gln
CTG
[ENA]
¡û
>W1810444140
PZJL01000012
Gammaproteobacteria
Salinicola sp. CR57 [PZJL]
95372
95298
-
Gln
CTG
[ENA]
¡û
>W1810444179
PZJM01000004
Gammaproteobacteria
Salinicola lusitanus CR50 [PZJM]
718314
718388
+
Gln
CTG
[ENA]
¡û
>W1810444278
PZJO01000002
Gammaproteobacteria
Salinicola endophyticus CPA92 [PZJO]
362513
362587
+
Gln
CTG
[ENA]
¡û
>W1810444472
PZJR01000003
Gammaproteobacteria
Salinicola sp. CPA57 [PZJR]
144292
144218
-
Gln
CTG
[ENA]
¡û
>W1810444569
PZJS01000008
Gammaproteobacteria
Salinicola socius DSM 19940 [PZJS]
546983
546909
-
Gln
CTG
[ENA]
¡û
>W1810444584
PZJT01000002
Gammaproteobacteria
Salinicola salarius DSM 18044 [PZJT]
202613
202539
-
Gln
CTG
[ENA]
¡û
>W1810444665
PZJU01000010
Gammaproteobacteria
Salinicola peritrichatus JCM 18795 [PZJU]
147292
147366
+
Gln
CTG
[ENA]
¡û
>W1810444805
PZJW01000006
Gammaproteobacteria
Salinicola acroporae LMG 28587 [PZJW]
658613
658687
+
Gln
CTG
[ENA]
¡û
>W1810786977
QRDJ01000006
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
1343763
1343837
+
Gln
CTG
[ENA]
¡û
>C161085608
CP015243
Gammaproteobacteria
Halotalea alkalilenta IHB B 13600 [CP015243]
1902911
1902837
-
Gln
CTG
[Ensembl]
¡û
>C161085615
CP015243
Gammaproteobacteria
Halotalea alkalilenta IHB B 13600 [CP015243]
79553
79479
-
Gln
TTG
[Ensembl]
¡û
>W1610877936
LRFI01000153
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
65648
65574
-
Gln
TTG
[ENA]
¡û
>W1610877943
LRFI01000164
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
40325
40399
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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