This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400307 (33 seq.)
>W1710926968
LOEV01000135
Alphaproteobacteria
Alphaproteobacteria bacterium BRH_c36 [LOEV]
96
170
+
Val
CAC
[ENA]
¡û
>W131045440
AMRL01000008
Alphaproteobacteria
Oceanibaculum indicum P24 [AMRL]
47488
47562
+
Val
CAC
[ENA]
¡û
>W1711628148
MPOB01000004
Alphaproteobacteria
Oceanibaculum nanhaiense L54-1-50 [MPOB]
289763
289689
-
Val
CAC
[ENA]
¡û
>WENV180595770
OCPF01031779
[OCPF] marine metagenome; ENVO.00002150
319
393
+
Val
CAC
[ENA]
¡û
>WENV181167973
OEIU01118097
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
335
261
-
Val
CAC
[ENA]
¡û
>WENV181226677
OFDN01000004
[OFDN] hot springs metagenome; Water
297469
297543
+
Val
CAC
[ENA]
¡û
>WENV170000128
AERA01013966
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
3599
3525
-
Val
CAC
[ENA]
¡û
>WENV170002817
AGTN01138147
[AGTN] bioreactor metagenome; poplar biomass
466
392
-
Val
CAC
[ENA]
¡û
>WENV170553139
CXWK01008847
[CXWK] wastewater metagenome; activated sludge
1696
1770
+
Val
CAC
[ENA]
¡û
>WENV170650285
JRYD01044388
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
802
876
+
Val
CAC
[ENA]
¡û
>WENV170650667
JRYE01009328
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
5342
5268
-
Val
CAC
[ENA]
¡û
>WENV170652257
JRYH01000355
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
120359
120433
+
Val
CAC
[ENA]
¡û
>WENV170652368
JRYH01001560
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
58080
58154
+
Val
CAC
[ENA]
¡û
>WENV170652426
JRYH01002758
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
5631
5557
-
Val
CAC
[ENA]
¡û
>WENV170652502
JRYH01005185
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
19357
19431
+
Val
CAC
[ENA]
¡û
>WENV170655304
JTFN01019556
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
692
766
+
Val
CAC
[ENA]
¡û
>W09135201
ACVL01000004
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [ACVL]
3132
3058
-
Val
CAC
[ENA]
¡û
>W1910236461
FPHO01000002
Alphaproteobacteria
Hyphomicrobium sp. CS1GBMeth3 [FPHO]
1219951
1220025
+
Val
CAC
[ENA]
¡û
>C141010501
CP006912
Alphaproteobacteria
Hyphomicrobium nitrativorans NL23 [CP006912]
2824399
2824473
+
Val
CAC
[Ensembl]
¡û
>C151104299
LN829118
Alphaproteobacteria
Candidatus Filomicrobium marinum strain W [LN829118]
2533515
2533441
-
Val
CAC
[Ensembl]
¡û
>C151104338
LN829119
Alphaproteobacteria
Candidatus Filomicrobium marinum Y [LN829119]
3240314
3240388
+
Val
CAC
[Ensembl]
¡û
>W2010385689
FPHO01000002
Alphaproteobacteria
Hyphomicrobium sp. CS1GBMeth3 [FPHO]
1219951
1220025
+
Val
CAC
[ENA]
¡û
>W2011373426
RBIG01000001
Alphaproteobacteria
Oceanibaculum indicum USBA 36 [RBIG]
1195209
1195283
+
Val
CAC
[ENA]
¡û
>W2011621829
SLWL01000010
Alphaproteobacteria
Camelimonas lactis DSM 22958 [SLWL]
17898
17972
+
Val
CAC
[ENA]
¡û
>W2110054291
BNCG01000013
Alphaproteobacteria
Camelimonas fluminis KCTC 42282 [BNCG]
93100
93026
-
Val
CAC
[ENA]
¡û
>W1510072644
CDHO01000002
Alphaproteobacteria
Hyphomicrobium sp. GJ21 [CDHO]
475122
475048
-
Val
CAC
[ENA]
¡û
>C231568825
CP115706
Alphaproteobacteria
Hyphomicrobium sp. DMF-1 [CP115706]
3195596
3195670
+
Val
CAC
-
¡û
>C10107532
CP002083
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [CP002083]
1881667
1881741
+
Val
CAC
[Ensembl]
¡û
>WENV11100486
AERA01013966
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
3599
3525
-
Val
CAC
[ENA]
¡û
>W11181116
AGIS01000004
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [AGIS]
278687
278761
+
Val
CAC
[ENA]
¡û
>C131015807
CP005587
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [CP005587]
1694958
1695032
+
Val
CAC
[Ensembl]
¡û
>W1610784510
LOEV01000135
Alphaproteobacteria
Alphaproteobacteria bacterium BRH_c36 [LOEV]
96
170
+
Val
CAC
[ENA]
¡û
>W1710524939
FNJC01000004
Alphaproteobacteria
Filomicrobium insigne [FNJC]
401539
401465
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK