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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400363 (32 seq.)
>W1710923836
LOCK01000094
Bacillota
Desulfitobacterium hafniense [LOCK]
140085
140159
+
Thr
CGT
[ENA]
¡û
>W1710926989
LOEW01000079
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
1993
1919
-
Thr
CGT
[ENA]
¡û
>W1711312234
MASS01000008
Bacillota
Desulfosporosinus sp. BG [MASS]
1930
1856
-
Thr
CGT
[ENA]
¡û
>W1711342440
MCHF01000008
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
145882
145808
-
Thr
CGT
[ENA]
¡û
>W1711510570
MLBF01000009
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
35423
35497
+
Thr
CGT
[ENA]
¡û
>W1711926294
NADJ01000039
Bacillota
Desulfosporosinus sp. FKB [NADJ]
220237
220163
-
Thr
CGT
[ENA]
¡û
>W1711932746
NAHZ01000027
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
130932
131006
+
Thr
CGT
[ENA]
¡û
>W131162742
AQZD01000018
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
183119
183045
-
Thr
CGT
[ENA]
¡û
>W131162818
AQZF01000007
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
412288
412362
+
Thr
CGT
[ENA]
¡û
>W131164699
ARAZ01000037
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
70069
69995
-
Thr
CGT
[ENA]
¡û
>C007783
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
966084
966158
+
Thr
CGT
[Ensembl]
¡û
>w002172
AAAW04000004
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
548846
548775
-
Thr
CGT
[ENA]
¡û
>WENV183674288
ORJL011370704
[ORJL] groundwater metagenome; groundwater
599
525
-
Thr
CGT
[ENA]
¢þ
>WENV170784249
MCHG01000231
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
9654
9728
+
Thr
CGT
[ENA]
¢þ
>C09103978
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
903688
903762
+
Thr
CGT
[Ensembl]
¡û
>C151016311
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
385351
385425
+
Thr
CGT
[Ensembl]
¡û
>W1511430060
JUEE01000158
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
12702
12776
+
Thr
CGT
[ENA]
¡û
>W1511533669
JYNH01000027
Bacillota
Desulfosporosinus sp. I2 [JYNH]
15751
15825
+
Thr
CGT
[ENA]
¡û
>W1511564573
LADV01000254
Bacillota
Peptococcaceae bacterium BRH_c23 [LADV]
4161
4235
+
Thr
CGT
[ENA]
¡û
>W1511646000
LDZY01000002
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
324358
324432
+
Thr
CGT
[ENA]
¡û
>W11177258
AGAF01000106
Bacillota
Desulfosporosinus sp. OT [AGAF]
15326
15252
-
Thr
CGT
[ENA]
¡û
>W11181401
AGJB01000005
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
185278
185352
+
Thr
CGT
[ENA]
¡û
>C121005951
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
283605
283679
+
Thr
CGT
[Ensembl]
¡û
>C121011420
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
706899
706973
+
Thr
CGT
[Ensembl]
¡û
>C121014867
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
546550
546624
+
Thr
CGT
[Ensembl]
¡û
>W121007261
AFZX01000011
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
17402
17328
-
Thr
CGT
[ENA]
¡û
>W121010442
AGJG01000001
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
73411
73337
-
Thr
CGT
[ENA]
¡û
>W121010515
AGJH01000003
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
157447
157521
+
Thr
CGT
[ENA]
¡û
>W1610781437
LOCK01000094
Bacillota
Desulfitobacterium hafniense [LOCK]
140085
140159
+
Thr
CGT
[ENA]
¡û
>W1610784531
LOEW01000079
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
1993
1919
-
Thr
CGT
[ENA]
¡û
>W1710586663
FQXJ01000021
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
217
143
-
Thr
CGT
[ENA]
¡û
>W1710593506
FRDN01000003
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
47898
47824
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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