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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400369 (35 seq.)
>W1710891814
LNDB01000007
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
96484
96410
-
Gly
CCC
[ENA]
¡û
>W1710923815
LOCK01000040
Bacillota
Desulfitobacterium hafniense [LOCK]
3851
3925
+
Gly
CCC
[ENA]
¡û
>W1710927100
LOEZ01000061
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
43388
43462
+
Gly
CCC
[ENA]
¡û
>W131162531
AQYY01000008
Bacillota
Dehalobacter sp. FTH1 [AQYY]
2783
2857
+
Gly
CCC
[ENA]
¡û
>W1711342471
MCHF01000056
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
5787
5713
-
Gly
CCC
[ENA]
¡û
>W131162826
AQZF01000015
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
4130
4204
+
Gly
CCC
[ENA]
¡û
>W131162723
AQZD01000011
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
10641
10567
-
Gly
CCC
[ENA]
¡û
>W131164682
ARAZ01000016
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
10621
10547
-
Gly
CCC
[ENA]
¡û
>C007802
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
1727991
1728065
+
Gly
CCC
[Ensembl]
¡û
>w002209
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
64081
64010
-
Gly
CCC
[ENA]
¡û
>W141088319
AUUR01000179
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
72297
72223
-
Gly
CCC
[ENA]
¡û
>W141246546
CANE01000002
Bacillota
Dehalobacter restrictus E1 [CANE]
143076
143150
+
Gly
CCC
[ENA]
¡û
>W141246675
CANF01002314
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
143240
143314
+
Gly
CCC
[ENA]
¡û
>WENV183665321
ORJL010457255
[ORJL] groundwater metagenome; groundwater
11049
11123
+
Gly
CCC
[ENA]
¢þ
>WENV170659022
JXWO01000057
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
9751
9677
-
Gly
CCC
[ENA]
¢þ
>C09104013
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2805820
2805894
+
Gly
CCC
[Ensembl]
¡û
>C141011759
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
2918022
2917948
-
Gly
CCC
[Ensembl]
¡û
>W1910647165
LXPC01000012
Bacillota
Dehalobacter sp. MCB1 [LXPC]
36819
36893
+
Gly
CCC
[ENA]
¡û
>W1911608704
PNXX01000009
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
306729
306655
-
Gly
CCC
[ENA]
¡û
>W1911613531
POSF01000002
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
101108
101182
+
Gly
CCC
[ENA]
¡û
>C151016356
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2170758
2170684
-
Gly
CCC
[Ensembl]
¡û
>C151094374
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
2317673
2317599
-
Gly
CCC
-
¡û
>C11120635
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
3366996
3366922
-
Gly
CCC
[Ensembl]
¡û
>W11181423
AGJB01000028
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
1158
1232
+
Gly
CCC
[ENA]
¡û
>C121011454
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2113417
2113491
+
Gly
CCC
[Ensembl]
¡û
>W121010389
AGJE01000038
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
3890
3964
+
Gly
CCC
[ENA]
¡û
>W121010542
AGJH01000051
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
3979
4053
+
Gly
CCC
[ENA]
¡û
>W121007275
AFZX01000060
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
10400
10326
-
Gly
CCC
[ENA]
¡û
>C131008521
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
3043854
3043780
-
Gly
CCC
[Ensembl]
¡û
>C131008572
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
3065949
3065875
-
Gly
CCC
[Ensembl]
¡û
>C131003262
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1810096
1810170
+
Gly
CCC
[Ensembl]
¡û
>W1610752179
LNDB01000007
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
96484
96410
-
Gly
CCC
[ENA]
¡û
>W1610781416
LOCK01000040
Bacillota
Desulfitobacterium hafniense [LOCK]
3851
3925
+
Gly
CCC
[ENA]
¡û
>W1610784642
LOEZ01000061
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
43388
43462
+
Gly
CCC
[ENA]
¡û
>W1710593555
FRDN01000021
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
76292
76218
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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