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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400454 (14 seq.)
>WENV170111989
CEGC01000380
[CEGC] microbial mat metagenome; grass silage
3690
3614
-
Ile
GAT
[ENA]
¡û
>WENV170112494
CEGF01001360
[CEGF] microbial mat metagenome; grass silage
192
116
-
Ile
GAT
[ENA]
¡û
>WENV170655134
JTFN01007046
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
76
152
+
Ile
GAT
[ENA]
¡û
>WENV170657480
JTFO01164871
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
202
126
-
Ile
GAT
[ENA]
¡û
>W2010683085
JACEMT010000023
Gammaproteobacteria
Marinobacterium sp. 3-1745 [JACEMT]
138
214
+
Ile
GAT
[ENA]
¡û
>W2110639316
JAHQZT010000080
Gammaproteobacteria
Marinobacterium sp. A346 [JAHQZT]
138
214
+
Ile
GAT
[ENA]
¡û
>C211032066
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
145032
145108
+
Ile
GAT
-
¡û
>C211032091
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
3486293
3486217
-
Ile
GAT
-
¡û
>C211032101
CP022297
Gammaproteobacteria
Marinobacterium georgiense IC961 [CP022297]
2957750
2957674
-
Ile
GAT
-
¡û
>C231313070
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
101473
101549
+
Ile
GAT
-
¡û
>C231313080
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
777036
777112
+
Ile
GAT
-
¡û
>C231313106
CP092123
Gammaproteobacteria
Marinobacterium sediminicola 1.7287 [CP092123]
3177203
3177127
-
Ile
GAT
-
¡û
>C161091193
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
3813554
3813478
-
Ile
GAT
[Ensembl]
¡û
>C161107348
LN890288
Gammaproteobacteria
Serratia symbiotica STs [LN890288]
590556
590479
-
Ile
GAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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