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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400468 (91 seq.)
>W1711120612
LUGK01000053
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
181446
181373
-
Glu
CTC
[ENA]
¡û
>W1711167784
LVWX01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
315104
315031
-
Glu
CTC
[ENA]
¡û
>W1711167852
LVWY01000005
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
315050
314977
-
Glu
CTC
[ENA]
¡û
>W1711185031
LWNA01000067
Bacillota
Lactobacillus sp. HMSC08B12 [LWNA]
21629
21556
-
Glu
CTC
[ENA]
¡û
>W131204322
ATBQ01000105
Bacillota
Lactobacillus delbrueckii subsp. lactis CRL581 [ATBQ]
33632
33705
+
Glu
CTC
[ENA]
¡û
>W1711665948
MRBF01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
1098241
1098168
-
Glu
CTC
[ENA]
¡û
>W1711678783
MRUN01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
749264
749337
+
Glu
CTC
[ENA]
¡û
>C171048656
CP016393
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND04 [CP016393]
379949
380022
+
Glu
CTC
-
¡û
>C171074172
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
959996
960069
+
Glu
CTC
-
¡û
>C171075508
CP018215
Bacillota
Lactobacillus delbrueckii subsp. lactis KCCM 34717 [CP018215]
1136350
1136423
+
Glu
CTC
-
¡û
>C171075635
CP018216
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii KCTC 13731 [CP018216]
609508
609435
-
Glu
CTC
-
¡û
>C171075729
CP018217
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [CP018217]
627046
626973
-
Glu
CTC
-
¡û
>C171075815
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
951832
951759
-
Glu
CTC
-
¡û
>C171081404
CP018614
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [CP018614]
613764
613691
-
Glu
CTC
-
¡û
>C171089476
CP019120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 [CP019120]
579878
579805
-
Glu
CTC
-
¡û
>C171116213
CP021136
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii TUA4408L [CP021136]
1679737
1679664
-
Glu
CTC
-
¡û
>C011433
CR954253
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [CR954253]
590793
590722
-
Glu
CTC
[Ensembl]
¡û
>C011588
CP000412
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [CP000412]
584935
584864
-
Glu
CTC
[Ensembl]
¡û
>W141037916
ALPY01000066
Bacillota
Lactobacillus delbrueckii ZN7a-9 [ALPY]
76113
76040
-
Glu
CTC
[ENA]
¡û
>WENV181659869
OGOF01000919
[OGOF] human gut metagenome; faeces
18338
18265
-
Glu
CTC
[ENA]
¢þ
>WENV181723788
OGPW01024894
[OGPW] human gut metagenome; faeces
454
381
-
Glu
CTC
[ENA]
¢þ
>W141227997
BALP01000001
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii JCM 1012 [BALP]
72726
72799
+
Glu
CTC
[ENA]
¡û
>WENV182349949
OIBE01000550
[OIBE] human gut metagenome; feces
5663
5590
-
Glu
CTC
[ENA]
¢þ
>WENV182369987
OICS01000555
[OICS] human gut metagenome; feces
9795
9868
+
Glu
CTC
[ENA]
¢þ
>WENV182381926
OIDR01001260
[OIDR] human gut metagenome; feces
3219
3146
-
Glu
CTC
[ENA]
¢þ
>W141246086
CALZ01000138
Bacillota
Lactobacillus equicursoris 66c [CALZ]
3236
3309
+
Glu
CTC
[ENA]
¡û
>W141246114
CAMA01000058
Bacillota
Lactobacillus equicursoris CIP 110162 [CAMA]
13299
13372
+
Glu
CTC
[ENA]
¡û
>W141246139
CAMA01000146
Bacillota
Lactobacillus equicursoris CIP 110162 [CAMA]
10363
10290
-
Glu
CTC
[ENA]
¡û
>W141264125
CCDV01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDV]
760301
760228
-
Glu
CTC
[ENA]
¡û
>W141264918
CCET01000002
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCET]
588196
588123
-
Glu
CTC
[ENA]
¡û
>W141265002
CCEU01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCEU]
546469
546396
-
Glu
CTC
[ENA]
¡û
>WENV183122624
OLNW01000003
[OLNW] human gut metagenome; faeces
98104
98177
+
Glu
CTC
[ENA]
¢þ
>WENV183167021
OLOY01018057
[OLOY] human gut metagenome; faeces
675
602
-
Glu
CTC
[ENA]
¢þ
>WENV183223680
OLQM01070651
[OLQM] human gut metagenome; faeces
22
95
+
Glu
CTC
[ENA]
¢þ
>WENV183238739
OLQZ01014648
[OLQZ] human gut metagenome; faeces
323
396
+
Glu
CTC
[ENA]
¢þ
>WENV183298156
OLSM01064256
[OLSM] human gut metagenome; faeces
582
509
-
Glu
CTC
[ENA]
¢þ
>WENV183772268
PPYF01016709
[PPYF] human gut metagenome; stool from patient with Crohn's disease
404
331
-
Glu
CTC
[ENA]
¢þ
>WENV183785823
PPYF01298390
[PPYF] human gut metagenome; stool from patient with Crohn's disease
248280
248207
-
Glu
CTC
[ENA]
¢þ
>C181025022
CP017235
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus L99 [CP017235]
574896
574823
-
Glu
CTC
-
¡û
>C181074570
CP022988
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [CP022988]
952344
952271
-
Glu
CTC
-
¡û
>C181076098
CP023139
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3034 [CP023139]
720609
720536
-
Glu
CTC
-
¡û
>C181221130
LT899687
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LT899687]
577822
577749
-
Glu
CTC
-
¡û
>C191063465
CP029250
Bacillota
Lactobacillus delbrueckii [CP029250]
734628
734555
-
Glu
CTC
-
¡û
>C191089955
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
343817
343890
+
Glu
CTC
-
¡û
>C191224741
LS991409
Bacillota
Lactobacillus delbrueckii subsp. lactis [LS991409]
641480
641407
-
Glu
CTC
-
¡û
>W09101808
AAGQ01000111
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
1095
1168
+
Glu
CTC
[ENA]
¡û
>W1910180832
BJLK01000004
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3376 [BJLK]
45648
45575
-
Glu
CTC
[ENA]
¡û
>W1910180901
BJLM01000016
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3534 [BJLM]
17188
17115
-
Glu
CTC
[ENA]
¡û
>W1910180978
BJLO01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3734 [BJLO]
6458
6385
-
Glu
CTC
[ENA]
¡û
>W1910182490
BJMY01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus NBRC 13953 [BJMY]
312273
312200
-
Glu
CTC
[ENA]
¡û
>W1910186274
CCDS01000004
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDS]
97895
97822
-
Glu
CTC
[ENA]
¡û
>W1910186337
CCDT01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDT]
97877
97950
+
Glu
CTC
[ENA]
¡û
>W1910186417
CCDU01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDU]
100813
100886
+
Glu
CTC
[ENA]
¡û
>W1911631613
PUFG01000042
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
76441
76368
-
Glu
CTC
[ENA]
¡û
>W1911702046
QNXB01000001
Bacillota
Lactobacillus delbrueckii TJA31 [QNXB]
98597
98670
+
Glu
CTC
[ENA]
¡û
>W1810000511
BEWJ01000023
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3202 [BEWJ]
19989
20062
+
Glu
CTC
[ENA]
¡û
>W1810190921
PKKE01000034
Bacillota
Lactobacillus delbrueckii UMB0003 [PKKE]
19910
19837
-
Glu
CTC
[ENA]
¡û
>W1810445113
PZKI01000003
Bacillota
Lactobacillus delbrueckii AVK [PZKI]
13262
13189
-
Glu
CTC
[ENA]
¡û
>W1810744641
QOVB01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MBT 92059 [QOVB]
98560
98633
+
Glu
CTC
[ENA]
¡û
>W10124039
AEAT01000087
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
8377
8450
+
Glu
CTC
[ENA]
¡û
>C11112505
CP000156
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus 2038 [CP000156]
582722
582649
-
Glu
CTC
[Ensembl]
¡û
>C11112603
CP002341
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND02 [CP002341]
633316
633243
-
Glu
CTC
[Ensembl]
¡û
>W11130876
AEAT01000087
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
8377
8450
+
Glu
CTC
[ENA]
¡û
>W1511510266
JXRV01000022
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
148684
148611
-
Glu
CTC
[ENA]
¡û
>W11152253
AEXU01000132
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AEXU]
3443
3370
-
Glu
CTC
[ENA]
¡û
>W1511694242
LGAS01000024
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [LGAS]
42131
42058
-
Glu
CTC
[ENA]
¡û
>W1511698293
LGHR01000007
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [LGHR]
269039
268966
-
Glu
CTC
[ENA]
¡û
>C161057632
CP013610
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MN-BM-F01 [CP013610]
595662
595589
-
Glu
CTC
[Ensembl]
¡û
>W121009764
AGFO01000008
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 [AGFO]
166766
166693
-
Glu
CTC
[ENA]
¡û
>W121010046
AGHW01000030
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 [AGHW]
13164
13091
-
Glu
CTC
[ENA]
¡û
>W1610033070
AZCR01000002
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
22831
22758
-
Glu
CTC
[ENA]
¡û
>W1610033717
AZDE01000019
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
3469
3396
-
Glu
CTC
[ENA]
¡û
>W1610034481
AZDU01000001
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
17114
17187
+
Glu
CTC
[ENA]
¡û
>W1610036643
AZFL01000025
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
97866
97939
+
Glu
CTC
[ENA]
¡û
>W1610044398
BBAN01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [BBAN]
316978
316905
-
Glu
CTC
[ENA]
¡û
>W1610045815
BBBW01000001
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
17068
17141
+
Glu
CTC
[ENA]
¡û
>W1610120859
CZPS01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
98529
98602
+
Glu
CTC
[ENA]
¡û
>W1610502766
FLLT01000005
Bacillota
Lactobacillus delbrueckii [FLLT]
378924
378851
-
Glu
CTC
[ENA]
¡û
>W1610527958
JQAV01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 DSM 20081 [JQAV]
98274
98347
+
Glu
CTC
[ENA]
¡û
>W1610529651
JQCG01000003
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
20054
20127
+
Glu
CTC
[ENA]
¡û
>W1610931809
LUGK01000053
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
181446
181373
-
Glu
CTC
[ENA]
¡û
>W1610977853
LVWX01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
315104
315031
-
Glu
CTC
[ENA]
¡û
>W1610977921
LVWY01000005
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
315050
314977
-
Glu
CTC
[ENA]
¡û
>W1710030342
AZCR01000002
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
22831
22758
-
Glu
CTC
[ENA]
¡û
>W1710030895
AZDE01000019
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
3469
3396
-
Glu
CTC
[ENA]
¡û
>W1710031608
AZDU01000001
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
17114
17187
+
Glu
CTC
[ENA]
¡û
>W1710033682
AZFL01000025
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
97866
97939
+
Glu
CTC
[ENA]
¡û
>W1710042656
BBBW01000001
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
17068
17141
+
Glu
CTC
[ENA]
¡û
>W1710123563
CZPS01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
98529
98602
+
Glu
CTC
[ENA]
¡û
>W1710496165
FLLT01000005
Bacillota
Lactobacillus delbrueckii [FLLT]
378924
378851
-
Glu
CTC
[ENA]
¡û
>W1710631241
JQCG01000003
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
20054
20127
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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