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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400508 (110 seq.)
>W1711170087
LWAE01000001
Bacillota
Clostridium magnum DSM 2767 [LWAE]
494144
494218
+
Gly
GCC
[ENA]
¡û
>W1711170098
LWAE01000001
Bacillota
Clostridium magnum DSM 2767 [LWAE]
495130
495204
+
Gly
GCC
[ENA]
¡û
>W1711170104
LWAE01000001
Bacillota
Clostridium magnum DSM 2767 [LWAE]
706173
706247
+
Gly
GCC
[ENA]
¡û
>W1711170137
LWAE01000008
Bacillota
Clostridium magnum DSM 2767 [LWAE]
107762
107836
+
Gly
GCC
[ENA]
¡û
>W1711170163
LWAE01000012
Bacillota
Clostridium magnum DSM 2767 [LWAE]
18873
18799
-
Gly
GCC
[ENA]
¡û
>C171030458
CP014176
Bacillota
Clostridium argentinense 89G [CP014176]
1607128
1607202
+
Gly
GCC
-
¡û
>C007088
AE015927
Bacillota
Clostridium tetani E88 Massachusetts [AE015927]
2523642
2523568
-
Gly
GCC
[Ensembl]
¡û
>C007092
AE015927
Bacillota
Clostridium tetani E88 Massachusetts [AE015927]
2414948
2414874
-
Gly
GCC
[Ensembl]
¡û
>W141212229
AZQP01000004
Bacillota
Fervidicella metallireducens AeB [AZQP]
11533
11607
+
Gly
GCC
[ENA]
¡û
>W141212236
AZQP01000010
Bacillota
Fervidicella metallireducens AeB [AZQP]
70102
70028
-
Gly
GCC
[ENA]
¡û
>W141265711
CCFK01000004
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
341941
342015
+
Gly
GCC
[ENA]
¡û
>W141265720
CCFK01000004
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
343695
343769
+
Gly
GCC
[ENA]
¡û
>W141265731
CCFK01000004
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
344678
344752
+
Gly
GCC
[ENA]
¡û
>W141265743
CCFK01000005
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
697
771
+
Gly
GCC
[ENA]
¡û
>W141265760
CCFK01000007
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
571591
571665
+
Gly
GCC
[ENA]
¡û
>W141267309
CCNN01000004
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
341941
342015
+
Gly
GCC
[ENA]
¡û
>W141267318
CCNN01000004
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
343695
343769
+
Gly
GCC
[ENA]
¡û
>W141267329
CCNN01000004
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
344678
344752
+
Gly
GCC
[ENA]
¡û
>W141267341
CCNN01000005
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
697
771
+
Gly
GCC
[ENA]
¡û
>W141267358
CCNN01000007
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
571591
571665
+
Gly
GCC
[ENA]
¡û
>WENV170004632
AGTN01742122
[AGTN] bioreactor metagenome; poplar biomass
216
290
+
Gly
GCC
[ENA]
¢þ
>C181159854
CP027782
Bacillota
Clostridium tetani Mfbjulcb2 [CP027782]
413504
413578
+
Gly
GCC
-
¡û
>C181226474
LT906477
Bacillota
Clostridium cochlearium NCTC13027 [LT906477]
2037153
2037079
-
Gly
GCC
-
¡û
>C181226486
LT906477
Bacillota
Clostridium cochlearium NCTC13027 [LT906477]
2036072
2035998
-
Gly
GCC
-
¡û
>C181226490
LT906477
Bacillota
Clostridium cochlearium NCTC13027 [LT906477]
1926569
1926495
-
Gly
GCC
-
¡û
>W141734356
JNLN01000001
Bacillota
Clostridium algidicarnis [JNLN]
2476262
2476336
+
Gly
CCC
[ENA]
¡û
>W141734393
JNLN01000001
Bacillota
Clostridium algidicarnis [JNLN]
342096
342022
-
Gly
GCC
[ENA]
¡û
>W141734405
JNLN01000001
Bacillota
Clostridium algidicarnis [JNLN]
341006
340932
-
Gly
GCC
[ENA]
¡û
>W1911491607
OAOH01000001
Bacillota
Clostridium cochlearium [OAOH]
385689
385763
+
Gly
GCC
[ENA]
¡û
>W1911694056
QMAN01000002
Bacillota
Clostridium tetani 1337 [QMAN]
260677
260603
-
Gly
GCC
[ENA]
¡û
>W1911694084
QMAN01000033
Bacillota
Clostridium tetani 1337 [QMAN]
204
278
+
Gly
GCC
[ENA]
¡û
>W1911694127
QMAO01000013
Bacillota
Clostridium tetani 778.17 [QMAO]
283571
283497
-
Gly
GCC
[ENA]
¡û
>W1911694138
QMAO01000013
Bacillota
Clostridium tetani 778.17 [QMAO]
282569
282495
-
Gly
GCC
[ENA]
¡û
>W1911694142
QMAO01000013
Bacillota
Clostridium tetani 778.17 [QMAO]
170442
170368
-
Gly
GCC
[ENA]
¡û
>W1911694163
QMAP01000005
Bacillota
Clostridium tetani 2017.061 [QMAP]
247
321
+
Gly
GCC
[ENA]
¡û
>W1911694167
QMAP01000005
Bacillota
Clostridium tetani 2017.061 [QMAP]
110509
110583
+
Gly
GCC
[ENA]
¡û
>W1911694244
QMAQ01000032
Bacillota
Clostridium tetani 202.15 [QMAQ]
110149
110223
+
Gly
GCC
[ENA]
¡û
>W1911694267
QMAQ01000055
Bacillota
Clostridium tetani 202.15 [QMAQ]
158
84
-
Gly
GCC
[ENA]
¡û
>W1911694284
QMAR01000009
Bacillota
Clostridium tetani 157.15 [QMAR]
158
84
-
Gly
GCC
[ENA]
¡û
>W1911694321
QMAR01000023
Bacillota
Clostridium tetani 157.15 [QMAR]
150789
150715
-
Gly
GCC
[ENA]
¡û
>W1911694360
QMAS01000023
Bacillota
Clostridium tetani 89.12 [QMAS]
40060
40134
+
Gly
GCC
[ENA]
¡û
>W1911694372
QMAS01000023
Bacillota
Clostridium tetani 89.12 [QMAS]
41150
41224
+
Gly
GCC
[ENA]
¡û
>W1911694376
QMAS01000023
Bacillota
Clostridium tetani 89.12 [QMAS]
151324
151398
+
Gly
GCC
[ENA]
¡û
>W1911694410
QMAT01000001
Bacillota
Clostridium tetani 46.1.08 [QMAT]
40060
40134
+
Gly
GCC
[ENA]
¡û
>W1911694414
QMAT01000001
Bacillota
Clostridium tetani 46.1.08 [QMAT]
150234
150308
+
Gly
GCC
[ENA]
¡û
>W1911694500
QMAU01000015
Bacillota
Clostridium tetani 63.05 [QMAU]
38274
38348
+
Gly
GCC
[ENA]
¡û
>W1911694505
QMAU01000021
Bacillota
Clostridium tetani 63.05 [QMAU]
7743
7669
-
Gly
GCC
[ENA]
¡û
>W1911694515
QMAU01000056
Bacillota
Clostridium tetani 63.05 [QMAU]
18
92
+
Gly
GCC
[ENA]
¡û
>W1911694530
QMAV01000002
Bacillota
Clostridium tetani 358.99 [QMAV]
146726
146800
+
Gly
GCC
[ENA]
¡û
>W1911694572
QMAV01000049
Bacillota
Clostridium tetani 358.99 [QMAV]
160
86
-
Gly
GCC
[ENA]
¡û
>W1911694584
QMAW01000003
Bacillota
Clostridium tetani 75.97 [QMAW]
110092
110166
+
Gly
GCC
[ENA]
¡û
>W1911694635
QMAW01000040
Bacillota
Clostridium tetani 75.97 [QMAW]
160
86
-
Gly
GCC
[ENA]
¡û
>W1911694643
QMAX01000003
Bacillota
Clostridium tetani 407.86 [QMAX]
110092
110166
+
Gly
GCC
[ENA]
¡û
>W1911694697
QMAX01000039
Bacillota
Clostridium tetani 407.86 [QMAX]
160
86
-
Gly
GCC
[ENA]
¡û
>W1911694704
QMAY01000004
Bacillota
Clostridium tetani 641.84 [QMAY]
154289
154215
-
Gly
GCC
[ENA]
¡û
>W1911694758
QMAY01000032
Bacillota
Clostridium tetani 641.84 [QMAY]
160
86
-
Gly
GCC
[ENA]
¡û
>W1911694790
QMAZ01000022
Bacillota
Clostridium tetani 132CV [QMAZ]
191533
191459
-
Gly
GCC
[ENA]
¡û
>W1911694794
QMAZ01000022
Bacillota
Clostridium tetani 132CV [QMAZ]
81301
81227
-
Gly
GCC
[ENA]
¡û
>W1911694858
QMBA01000013
Bacillota
Clostridium tetani 3582 [QMBA]
52720
52794
+
Gly
GCC
[ENA]
¡û
>W1911694862
QMBA01000013
Bacillota
Clostridium tetani 3582 [QMBA]
162994
163068
+
Gly
GCC
[ENA]
¡û
>W1911694916
QMBB01000017
Bacillota
Clostridium tetani TMB2 [QMBB]
133224
133298
+
Gly
GCC
[ENA]
¡û
>W1911694929
QMBB01000022
Bacillota
Clostridium tetani TMB2 [QMBB]
13289
13215
-
Gly
GCC
[ENA]
¡û
>W1911694949
QMBC01000004
Bacillota
Clostridium tetani COR1 [QMBC]
105682
105756
+
Gly
GCC
[ENA]
¡û
>W1911694995
QMBC01000042
Bacillota
Clostridium tetani COR1 [QMBC]
160
86
-
Gly
GCC
[ENA]
¡û
>W1911695001
QMBD01000001
Bacillota
Clostridium tetani B4 [QMBD]
104170
104244
+
Gly
GCC
[ENA]
¡û
>W1911695038
QMBD01000020
Bacillota
Clostridium tetani B4 [QMBD]
800
726
-
Gly
GCC
[ENA]
¡û
>W1911695102
QMBE01000021
Bacillota
Clostridium tetani 512-15 [QMBE]
90208
90134
-
Gly
GCC
[ENA]
¡û
>W1911695111
QMBE01000021
Bacillota
Clostridium tetani 512-15 [QMBE]
89278
89204
-
Gly
GCC
[ENA]
¡û
>W1911695118
QMBE01000029
Bacillota
Clostridium tetani 512-15 [QMBE]
22129
22203
+
Gly
GCC
[ENA]
¡û
>W1911695135
QMBF01000004
Bacillota
Clostridium tetani 329 [QMBF]
105682
105756
+
Gly
GCC
[ENA]
¡û
>W1911695184
QMBF01000041
Bacillota
Clostridium tetani 329 [QMBF]
160
86
-
Gly
GCC
[ENA]
¡û
>W1911695196
QMBG01000003
Bacillota
Clostridium tetani 1240 [QMBG]
144851
144777
-
Gly
GCC
[ENA]
¡û
>W1911695243
QMBG01000045
Bacillota
Clostridium tetani 1240 [QMBG]
160
86
-
Gly
GCC
[ENA]
¡û
>W1911695280
QMBH01000015
Bacillota
Clostridium tetani 1586-Z1 [QMBH]
370501
370427
-
Gly
GCC
[ENA]
¡û
>W1911695284
QMBH01000015
Bacillota
Clostridium tetani 1586-Z1 [QMBH]
260327
260253
-
Gly
GCC
[ENA]
¡û
>W1911695327
QMBI01000021
Bacillota
Clostridium tetani 1586-U1 [QMBI]
845
919
+
Gly
GCC
[ENA]
¡û
>W1911695331
QMBI01000021
Bacillota
Clostridium tetani 1586-U1 [QMBI]
111019
111093
+
Gly
GCC
[ENA]
¡û
>W1911695379
QMBJ01000015
Bacillota
Clostridium tetani 4784A [QMBJ]
40146
40220
+
Gly
GCC
[ENA]
¡û
>W1911695383
QMBJ01000015
Bacillota
Clostridium tetani 4784A [QMBJ]
150320
150394
+
Gly
GCC
[ENA]
¡û
>W1911695426
QMBK01000009
Bacillota
Clostridium tetani Strain 3 [QMBK]
40196
40270
+
Gly
GCC
[ENA]
¡û
>W1911695430
QMBK01000009
Bacillota
Clostridium tetani Strain 3 [QMBK]
150370
150444
+
Gly
GCC
[ENA]
¡û
>W1911695472
QMBL01000002
Bacillota
Clostridium tetani Harvard [QMBL]
40146
40220
+
Gly
GCC
[ENA]
¡û
>W1911695476
QMBL01000002
Bacillota
Clostridium tetani Harvard [QMBL]
150320
150394
+
Gly
GCC
[ENA]
¡û
>W1911696419
QMDR01000042
Bacillota
Clostridium tetani 3483 [QMDR]
6044
5970
-
Gly
GCC
[ENA]
¡û
>W1911696431
QMDR01000044
Bacillota
Clostridium tetani 3483 [QMDR]
38204
38278
+
Gly
GCC
[ENA]
¡û
>W1911696439
QMDR01000063
Bacillota
Clostridium tetani 3483 [QMDR]
18
92
+
Gly
GCC
[ENA]
¡û
>W1810295718
PTIS01000007
Bacillota
Clostridium algidicarnis DSM 15099 [PTIS]
122372
122298
-
Gly
CCC
[ENA]
¡û
>C151100894
HG530135
Bacillota
Clostridium tetani 12124569 [HG530135]
2515662
2515588
-
Gly
GCC
[Ensembl]
¡û
>C151100898
HG530135
Bacillota
Clostridium tetani 12124569 [HG530135]
2405647
2405573
-
Gly
GCC
[Ensembl]
¡û
>W1511345182
JRGG01000003
Bacillota
Clostridium tetani C2 [JRGG]
248582
248508
-
Gly
GCC
[ENA]
¡û
>W1511345186
JRGG01000003
Bacillota
Clostridium tetani C2 [JRGG]
138424
138350
-
Gly
GCC
[ENA]
¡û
>W1511345219
JRGH01000002
Bacillota
Clostridium tetani ATCC 9441 [JRGH]
110062
110136
+
Gly
GCC
[ENA]
¡û
>W1511345250
JRGH01000016
Bacillota
Clostridium tetani ATCC 9441 [JRGH]
101
27
-
Gly
GCC
[ENA]
¡û
>W1511345269
JRGI01000001
Bacillota
Clostridium tetani ATCC 453 [JRGI]
368
442
+
Gly
GCC
[ENA]
¡û
>W1511345273
JRGI01000001
Bacillota
Clostridium tetani ATCC 453 [JRGI]
110628
110702
+
Gly
GCC
[ENA]
¡û
>W1511345328
JRGJ01000006
Bacillota
Clostridium tetani ATCC 19406 [JRGJ]
248595
248521
-
Gly
GCC
[ENA]
¡û
>W1511345332
JRGJ01000006
Bacillota
Clostridium tetani ATCC 19406 [JRGJ]
138435
138361
-
Gly
GCC
[ENA]
¡û
>W1511388519
JSWD01000112
Bacillota
Clostridium tetani 184.08 [JSWD]
5945
5871
-
Gly
GCC
[ENA]
¡û
>W1511480243
JWIX01000027
Bacillota
Clostridium tetani A [JWIX]
163209
163135
-
Gly
GCC
[ENA]
¡û
>W1511480247
JWIX01000027
Bacillota
Clostridium tetani A [JWIX]
53035
52961
-
Gly
GCC
[ENA]
¡û
>W1511595667
LBNB01000009
Bacillota
Clostridium tetani ATCC 454 [LBNB]
110034
110108
+
Gly
GCC
[ENA]
¡û
>W1610604766
LFRG01000001
Bacillota
Clostridium sp. ATCC 25772 [LFRG]
11873
11947
+
Gly
GCC
[ENA]
¡û
>W1610979250
LWAE01000001
Bacillota
Clostridium magnum DSM 2767 [LWAE]
495130
495204
+
Gly
GCC
[ENA]
¡û
>W1610979256
LWAE01000001
Bacillota
Clostridium magnum DSM 2767 [LWAE]
706173
706247
+
Gly
GCC
[ENA]
¡û
>W1610979289
LWAE01000008
Bacillota
Clostridium magnum DSM 2767 [LWAE]
107762
107836
+
Gly
GCC
[ENA]
¡û
>W1610979315
LWAE01000012
Bacillota
Clostridium magnum DSM 2767 [LWAE]
18873
18799
-
Gly
GCC
[ENA]
¡û
>W1710521493
FNGL01000002
Bacillota
Clostridium cochlearium [FNGL]
145141
145215
+
Gly
GCC
[ENA]
¡û
>W1710521497
FNGL01000002
Bacillota
Clostridium cochlearium [FNGL]
241043
241117
+
Gly
GCC
[ENA]
¡û
>W1710586801
FQXL01000065
Bacillota
Clostridium magnum DSM 2767 [FQXL]
1564
1638
+
Gly
GCC
[ENA]
¡û
>W1710600749
FUWT01000004
Bacillota
Clostridium tetani [FUWT]
110110
110184
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK