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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400575 (61 seq.)
>W1710932122
LOHZ01000025
Bacillota
Thermovenabulum gondwanense [LOHZ]
163
237
+
Asn
GTT
[ENA]
¡û
>W1710932141
LOHZ01000037
Bacillota
Thermovenabulum gondwanense [LOHZ]
44225
44299
+
Asn
GTT
[ENA]
¡û
>W1710932152
LOHZ01000045
Bacillota
Thermovenabulum gondwanense [LOHZ]
37491
37417
-
Asn
GTT
[ENA]
¡û
>WENV181226232
OFDK01000332
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
11252
11326
+
Asn
GTT
[ENA]
¡û
>WENV170561655
CZCA01019302
[CZCA] anaerobic digester metagenome; anaerobic digester
1558
1484
-
Asn
GTT
[ENA]
¡û
>WENV170562275
CZCB01001794
[CZCB] anaerobic digester metagenome; anaerobic digester
3183
3257
+
Asn
GTT
[ENA]
¡û
>WENV170644774
JMBW01089569
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
147
221
+
Asn
GTT
[ENA]
¡û
>WENV170687188
LFRM01181553
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
13160
13086
-
Asn
GTT
[ENA]
¡û
>WENV170689423
LFRM01293721
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
610
684
+
Asn
GTT
[ENA]
¡û
>WENV170721913
LSQX01209146
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1864
1790
-
Asn
GTT
[ENA]
¡û
>W141730562
JNIL01000001
Bacillota
Alicyclobacillus macrosporangiidus CPP55 [JNIL]
3907434
3907508
+
Asn
GTT
[ENA]
¡û
>W141730593
JNIL01000001
Bacillota
Alicyclobacillus macrosporangiidus CPP55 [JNIL]
539203
539129
-
Asn
GTT
[ENA]
¡û
>W09108187
ABTB01000009
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 [ABTB]
44666
44740
+
Asn
GTT
[ENA]
¡û
>W09108199
ABTB01000015
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 [ABTB]
66887
66813
-
Asn
GTT
[ENA]
¡û
>W09118148
ACCS01000012
Bacillota
Alicyclobacillus acidocaldarius LAA1 [ACCS]
24955
25029
+
Asn
GTT
[ENA]
¡û
>W09118183
ACCS01000054
Bacillota
Alicyclobacillus acidocaldarius LAA1 [ACCS]
2984
2910
-
Asn
GTT
[ENA]
¡û
>W2010453420
JAAEEH010000005
Bacillota
Clostridiales bacterium F-3ap [JAAEEH]
216
288
+
Asn
GTT
[ENA]
¡û
>W2110369980
JADPKZ010000021
Bacillota
Alicyclobacillus mali FL 18 [JADPKZ]
38484
38410
-
Asn
GTT
[ENA]
¡û
>W2110370015
JADPKZ010000040
Bacillota
Alicyclobacillus mali FL 18 [JADPKZ]
205836
205910
+
Asn
GTT
[ENA]
¡û
>W2110516690
JAFMTT010000002
Bacillota
Alicyclobacillus mali FSL-W10-0018 [JAFMTT]
193611
193685
+
Asn
GTT
[ENA]
¡û
>W2110516718
JAFMTT010000016
Bacillota
Alicyclobacillus mali FSL-W10-0018 [JAFMTT]
66620
66546
-
Asn
GTT
[ENA]
¡û
>W2110516772
JAFMTU010000026
Bacillota
Alicyclobacillus mali FSL-W10-0037 [JAFMTU]
42587
42513
-
Asn
GTT
[ENA]
¡û
>W2110516782
JAFMTU010000032
Bacillota
Alicyclobacillus mali FSL-W10-0037 [JAFMTU]
1169
1243
+
Asn
GTT
[ENA]
¡û
>C231259657
CP089291
Bacillota
Alicyclobacillaceae bacterium MYW30-H2 [CP089291]
1742154
1742228
+
Asn
GTT
-
¡û
>C231259680
CP089291
Bacillota
Alicyclobacillaceae bacterium MYW30-H2 [CP089291]
1783756
1783830
+
Asn
GTT
-
¡û
>C231259699
CP089291
Bacillota
Alicyclobacillaceae bacterium MYW30-H2 [CP089291]
3039869
3039943
+
Asn
GTT
-
¡û
>C231259716
CP089291
Bacillota
Alicyclobacillaceae bacterium MYW30-H2 [CP089291]
3406346
3406420
+
Asn
GTT
-
¡û
>C231259725
CP089291
Bacillota
Alicyclobacillaceae bacterium MYW30-H2 [CP089291]
3775398
3775324
-
Asn
GTT
-
¡û
>C10100027
CP001727
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 [CP001727]
2664904
2664978
+
Asn
GTT
[Ensembl]
¡û
>C10100053
CP001727
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 [CP001727]
294694
294620
-
Asn
GTT
[Ensembl]
¡û
>W2310021086
BSDN01000004
Bacillota
Tepidanaerobacter syntrophicus JE [BSDN]
210163
210089
-
Asn
GTT
[ENA]
¡û
>W2310021099
BSDN01000011
Bacillota
Tepidanaerobacter syntrophicus JE [BSDN]
25
99
+
Asn
GTT
[ENA]
¡û
>C11100026
CP002902
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 [CP002902]
2737350
2737424
+
Asn
GTT
[Ensembl]
¡û
>C11100054
CP002902
Bacillota
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 [CP002902]
332486
332412
-
Asn
GTT
[Ensembl]
¡û
>C11122551
CP002728
Bacillota
Tepidanaerobacter acetatoxydans Re1 [CP002728]
254968
255042
+
Asn
GTT
[Ensembl]
¡û
>C11122572
CP002728
Bacillota
Tepidanaerobacter acetatoxydans Re1 [CP002728]
1221861
1221935
+
Asn
GTT
[Ensembl]
¡û
>W1610061641
BCMU01000006
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
103
29
-
Asn
GTT
[ENA]
¡û
>W1610061644
BCMU01000007
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
524516
524442
-
Asn
GTT
[ENA]
¡û
>W1610061661
BCMU01000008
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
103
29
-
Asn
GTT
[ENA]
¡û
>W1610061671
BCMU01000009
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
574305
574231
-
Asn
GTT
[ENA]
¡û
>W1610069135
BCSG01000002
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
560
634
+
Asn
GTT
[ENA]
¡û
>W1610069175
BCSG01000060
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
6310
6236
-
Asn
GTT
[ENA]
¡û
>C131020933
HF563609
Bacillota
Tepidanaerobacter acetatoxydans Re1 [HF563609]
255163
255237
+
Asn
GTT
-
¡û
>C131020954
HF563609
Bacillota
Tepidanaerobacter acetatoxydans Re1 [HF563609]
1222827
1222901
+
Asn
GTT
-
¡û
>W1610605908
LFSJ01000095
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
13160
13086
-
Asn
GTT
[ENA]
¡û
>W1610605909
LFSJ01000165
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
610
684
+
Asn
GTT
[ENA]
¡û
>W1610789591
LOHZ01000025
Bacillota
Thermovenabulum gondwanense [LOHZ]
163
237
+
Asn
GTT
[ENA]
¡û
>W1610789610
LOHZ01000037
Bacillota
Thermovenabulum gondwanense [LOHZ]
44225
44299
+
Asn
GTT
[ENA]
¡û
>W1610789621
LOHZ01000045
Bacillota
Thermovenabulum gondwanense [LOHZ]
37491
37417
-
Asn
GTT
[ENA]
¡û
>W1710059306
BCMU01000006
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
103
29
-
Asn
GTT
[ENA]
¡û
>W1710059309
BCMU01000007
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
524516
524442
-
Asn
GTT
[ENA]
¡û
>W1710059326
BCMU01000008
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
103
29
-
Asn
GTT
[ENA]
¡û
>W1710059336
BCMU01000009
Bacillota
Tepidanaerobacter syntrophicus [BCMU]
574305
574231
-
Asn
GTT
[ENA]
¡û
>W1710066508
BCSG01000002
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
560
634
+
Asn
GTT
[ENA]
¡û
>W1710066548
BCSG01000060
Bacillota
Alicyclobacillus mali (ex Roth et al. 2021) NBRC 102425 [BCSG]
6310
6236
-
Asn
GTT
[ENA]
¡û
>W1710578766
FPBV01000007
Bacillota
Alicyclobacillus macrosporangiidus [FPBV]
122179
122253
+
Asn
GTT
[ENA]
¡û
>W1710578782
FPBV01000020
Bacillota
Alicyclobacillus macrosporangiidus [FPBV]
4320
4394
+
Asn
GTT
[ENA]
¡û
>W1710599221
FTOO01000001
Bacillota
Alicyclobacillus vulcanalis [FTOO]
69717
69643
-
Asn
GTT
[ENA]
¡û
>W1710599265
FTOO01000021
Bacillota
Alicyclobacillus vulcanalis [FTOO]
763
837
+
Asn
GTT
[ENA]
¡û
>W1710727195
LFSJ01000095
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
13160
13086
-
Asn
GTT
[ENA]
¡û
>W1710727196
LFSJ01000165
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
610
684
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK