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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.400674 (70 seq.)
>W1711069492
LSFR01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
593728
593656
-
Gln
CTG
[ENA]
¡û
>W1711080726
LSRG01000013
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
472953
472881
-
Gln
CTG
[ENA]
¡û
>W1711080790
LSRH01000036
Actinomycetota
Tsukamurella pulmonis [LSRH]
38765
38693
-
Gln
CTG
[ENA]
¡û
>W1711080807
LSRI01000001
Actinomycetota
Tsukamurella pulmonis [LSRI]
906826
906898
+
Gln
CTG
[ENA]
¡û
>W1711080850
LSRJ01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
494365
494293
-
Gln
CTG
[ENA]
¡û
>W1711139732
LVFF01000027
Actinomycetota
Dietzia maris [LVFF]
67544
67472
-
Gln
CTG
[ENA]
¡û
>W1711187570
LWPP01000064
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
281
209
-
Gln
CTG
[ENA]
¡û
>C171002029
CP009248
Actinomycetota
Corynebacterium sphenisci DSM 44792 [CP009248]
1020603
1020675
+
Gln
CTG
-
¡û
>WENV180711603
ODFP01010620
[ODFP] human metagenome; G_DNA_Anterior nares
92
164
+
Gln
CTG
[ENA]
¢þ
>WENV180745515
ODHL01000006
[ODHL] human metagenome; G_DNA_L_Retroauricular crease
223398
223470
+
Gln
CTG
[ENA]
¢þ
>WENV180749696
ODHR01000666
[ODHR] human metagenome; G_DNA_Anterior nares
190
262
+
Gln
CTG
[ENA]
¢þ
>WENV180855690
ODKY01002111
[ODKY] human metagenome; G_DNA_R_Retroauricular crease
225
297
+
Gln
CTG
[ENA]
¢þ
>WENV180878656
ODLX01002477
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
1130
1202
+
Gln
CTG
[ENA]
¢þ
>WENV180878752
ODLY01000004
[ODLY] human metagenome; G_DNA_Anterior nares
12338
12410
+
Gln
CTG
[ENA]
¢þ
>WENV180912902
ODSP01003073
[ODSP] human metagenome; G_DNA_Anterior nares
217
145
-
Gln
CTG
[ENA]
¢þ
>WENV180914927
ODTA01001015
[ODTA] human metagenome; G_DNA_Anterior nares
171
243
+
Gln
CTG
[ENA]
¢þ
>WENV180917968
ODTF01000003
[ODTF] human metagenome; G_DNA_Anterior nares
123294
123222
-
Gln
CTG
[ENA]
¢þ
>WENV180940234
ODTY01001585
[ODTY] human metagenome; G_DNA_Anterior nares
178
250
+
Gln
CTG
[ENA]
¢þ
>WENV180966803
ODUR01014094
[ODUR] human metagenome; G_DNA_Anterior nares
185
113
-
Gln
CTG
[ENA]
¢þ
>WENV180966923
ODUS01000232
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
1360
1432
+
Gln
CTG
[ENA]
¢þ
>WENV180972465
ODUV01000885
[ODUV] human metagenome; G_DNA_Anterior nares
240
168
-
Gln
CTG
[ENA]
¢þ
>WENV180979030
ODVB01001459
[ODVB] human metagenome; G_DNA_Anterior nares
240
312
+
Gln
CTG
[ENA]
¢þ
>WENV180984524
ODVH01000036
[ODVH] human metagenome; G_DNA_Anterior nares
7169
7097
-
Gln
CTG
[ENA]
¢þ
>WENV180989623
ODVM01012381
[ODVM] human metagenome; G_DNA_Anterior nares
142
70
-
Gln
CTG
[ENA]
¢þ
>WENV181000375
ODVU01018928
[ODVU] human metagenome; G_DNA_Anterior nares
207
135
-
Gln
CTG
[ENA]
¢þ
>WENV181006981
ODWC01001100
[ODWC] human metagenome; G_DNA_L_Retroauricular crease
1364
1436
+
Gln
CTG
[ENA]
¢þ
>WENV181009987
ODWG01000001
[ODWG] human metagenome; G_DNA_Anterior nares
132278
132206
-
Gln
CTG
[ENA]
¢þ
>WENV181012980
ODWL01004015
[ODWL] human metagenome; G_DNA_Anterior nares
177
249
+
Gln
CTG
[ENA]
¢þ
>WENV181025025
ODWY01000111
[ODWY] human metagenome; G_DNA_Anterior nares
8664
8592
-
Gln
CTG
[ENA]
¢þ
>WENV181030335
ODXG01000483
[ODXG] human metagenome; G_DNA_Anterior nares
283
211
-
Gln
CTG
[ENA]
¢þ
>WENV181032348
ODXM01000695
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
456
528
+
Gln
CTG
[ENA]
¢þ
>WENV181042240
ODXT01000029
[ODXT] human metagenome; G_DNA_R_Retroauricular crease
8278
8350
+
Gln
CTG
[ENA]
¢þ
>WENV181115892
OEES01002548
[OEES] human metagenome; G_DNA_Anterior nares
186
114
-
Gln
CTG
[ENA]
¢þ
>WENV181119528
OEFI01000084
[OEFI] human metagenome; G_DNA_Anterior nares
240
168
-
Gln
CTG
[ENA]
¢þ
>WENV181123282
OEFP01000004
[OEFP] human metagenome; G_DNA_R_Retroauricular crease
217594
217522
-
Gln
CTG
[ENA]
¢þ
>WENV181124376
OEFR01002378
[OEFR] human metagenome; G_DNA_Anterior nares
196
268
+
Gln
CTG
[ENA]
¢þ
>WENV181130999
OEFZ01000106
[OEFZ] human metagenome; G_DNA_Anterior nares
11672
11600
-
Gln
CTG
[ENA]
¢þ
>WENV181131042
OEFZ01000547
[OEFZ] human metagenome; G_DNA_Anterior nares
1859
1787
-
Gln
CTG
[ENA]
¢þ
>WENV181131809
OEGD01058838
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
169
241
+
Gln
CTG
[ENA]
¢þ
>W141243924
CAJY01000036
Actinomycetota
Tsukamurella sp. 1534 [CAJY]
145665
145737
+
Gln
CTG
[ENA]
¡û
>WENV182629884
OJKV01000453
[OJKV] metagenome; surface
693
765
+
Gln
CTG
[ENA]
¢þ
>WENV182641272
OJLG01000009
[OJLG] metagenome; surface
21588
21516
-
Gln
CTG
[ENA]
¢þ
>WENV182641589
OJLJ01000004
[OJLJ] metagenome; surface
44317
44389
+
Gln
CTG
[ENA]
¢þ
>WENV182642864
OJLP01008789
[OJLP] metagenome; surface
346
418
+
Gln
CTG
[ENA]
¢þ
>WENV182828281
OKDF01000737
[OKDF] human gut metagenome; human gut
1185
1113
-
Gln
CTG
[ENA]
¢þ
>WENV182839810
OKHF01007736
[OKHF] human gut metagenome; human gut
542
470
-
Gln
CTG
[ENA]
¢þ
>PL191001644
LR134451
Actinobacteria
Tsukamurella tyrosinosolvens NCTC13231 plasmid:9 (LR134451)
414486
414558
+
Gln
CTG
[ENA]
¡û
>C181017363
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
2020609
2020537
-
Gln
CTG
-
¡û
>C181035838
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
3270245
3270173
-
Gln
CTG
-
¡û
>C181148329
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
3255004
3254932
-
Gln
CTG
-
¡û
>C191193462
LR131273
Actinomycetota
Tsukamurella paurometabola NCTC10741 [LR131273]
3014528
3014600
+
Gln
CTG
-
¡û
>W09110304
ABVA01000005
Actinomycetota
Tsukamurella paurometabola DSM 20162 [ABVA]
470588
470516
-
Gln
CTG
[ENA]
¡û
>W1911717733
QQQF01000182
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
14287
14359
+
Gln
CTG
[ENA]
¡û
>W1810580880
QETM01000060
Actinomycetota
Dietzia maris AMT [QETM]
23045
23117
+
Gln
CTG
[ENA]
¡û
>W1810760490
QPKD01000186
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
3039
3111
+
Gln
CTG
[ENA]
¡û
>C151048693
CP009312
Actinomycetota
Lawsonella clevelandensis X1036 [CP009312]
293722
293650
-
Gln
CTG
-
¡û
>C151094726
CP012390
Actinomycetota
Lawsonella clevelandensis X1698 [CP012390]
294906
294834
-
Gln
CTG
-
¡û
>C10113693
CP001966
Actinomycetota
Tsukamurella paurometabola DSM 20162 [CP001966]
2952903
2952831
-
Gln
CTG
[Ensembl]
¡û
>W1610069392
BCSL01000010
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
67039
66967
-
Gln
CTG
[ENA]
¡û
>W1610069892
BCSW01000003
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
145585
145513
-
Gln
CTG
[ENA]
¡û
>W1610910020
LSFR01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
593728
593656
-
Gln
CTG
[ENA]
¡û
>W1610919593
LSRG01000013
Actinomycetota
Tsukamurella tyrosinosolvens [LSRG]
472953
472881
-
Gln
CTG
[ENA]
¡û
>W1610919657
LSRH01000036
Actinomycetota
Tsukamurella pulmonis [LSRH]
38765
38693
-
Gln
CTG
[ENA]
¡û
>W1610919674
LSRI01000001
Actinomycetota
Tsukamurella pulmonis [LSRI]
906826
906898
+
Gln
CTG
[ENA]
¡û
>W1610919717
LSRJ01000001
Actinomycetota
Tsukamurella tyrosinosolvens [LSRJ]
494365
494293
-
Gln
CTG
[ENA]
¡û
>W1610950740
LVFF01000027
Actinomycetota
Dietzia maris [LVFF]
67544
67472
-
Gln
CTG
[ENA]
¡û
>W1710066765
BCSL01000010
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
67039
66967
-
Gln
CTG
[ENA]
¡û
>W1710067265
BCSW01000003
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
145585
145513
-
Gln
CTG
[ENA]
¡û
>W1710527722
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
3299109
3299037
-
Gln
CTG
[ENA]
¡û
>W1710534703
FNSA01000003
Actinomycetota
Tsukamurella tyrosinosolvens [FNSA]
3638408
3638336
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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