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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.401782 (48 seq.)
>W1711422944
MIBW01000018
Campylobacterota
Sulfurimonas sp. GWF2_37_8 [MIBW]
18359
18433
+
Asn
GTT
[ENA]
¡û
>W1711422974
MICC01000080
Campylobacterota
Sulfurimonas sp. RIFOXYB12_FULL_35_9 [MICC]
1193
1119
-
Asn
GTT
[ENA]
¡û
>W1711422993
MICD01000252
Campylobacterota
Sulfurimonas sp. RIFOXYB2_FULL_37_5 [MICD]
1097
1171
+
Asn
GTT
[ENA]
¡û
>W1711422997
MICE01000012
Campylobacterota
Sulfurimonas sp. RIFOXYC2_FULL_36_7 [MICE]
1026
1100
+
Asn
GTT
[ENA]
¡û
>W1711423007
MICE01000383
Campylobacterota
Sulfurimonas sp. RIFOXYC2_FULL_36_7 [MICE]
3061
2987
-
Asn
GTT
[ENA]
¡û
>W1711423047
MICG01000232
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_36_11 [MICG]
1436
1510
+
Asn
GTT
[ENA]
¡û
>W1711582121
MNUZ01000044
Campylobacterota
Helicobacteraceae bacterium CG1_02_36_14 [MNUZ]
9749
9823
+
Asn
GTT
[ENA]
¡û
>W1711582140
MNUZ01000106
Campylobacterota
Helicobacteraceae bacterium CG1_02_36_14 [MNUZ]
1167
1093
-
Asn
GTT
[ENA]
¡û
>W1711584541
MNYP01000143
Campylobacterota
Helicobacteraceae bacterium CG2_30_36_10 [MNYP]
3463
3389
-
Asn
GTT
[ENA]
¡û
>W1711584542
MNYP01000143
Campylobacterota
Helicobacteraceae bacterium CG2_30_36_10 [MNYP]
3357
3283
-
Asn
GTT
[ENA]
¡û
>C171057191
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
405727
405801
+
Asn
GTT
-
¡û
>C171118596
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
350807
350881
+
Asn
GTT
-
¡û
>WENV180209338
OBAK01073993
[OBAK] marine metagenome; ENVO.00002150
88
14
-
Asn
GTT
[ENA]
¢þ
>WENV180287136
OBIK01000004
[OBIK] hydrothermal vent metagenome; sea water
29969
29895
-
Asn
GTT
[ENA]
¢þ
>WENV180287137
OBIK01000004
[OBIK] hydrothermal vent metagenome; sea water
29854
29780
-
Asn
GTT
[ENA]
¢þ
>W141083620
AUPZ01000013
Campylobacterota
Sulfurimonas hongkongensis AST-10 [AUPZ]
173529
173603
+
Asn
GTT
[ENA]
¡û
>W141083621
AUPZ01000013
Campylobacterota
Sulfurimonas hongkongensis AST-10 [AUPZ]
173627
173701
+
Asn
GTT
[ENA]
¡û
>WENV183514839
OMKS01034007
[OMKS] sediment metagenome; hot spring sediment
757
831
+
Asn
GTT
[ENA]
¢þ
>WENV170575521
FPHC01000028
[FPHC] hydrothermal vent metagenome genome assembly, contig: NODE_46.; water
26248
26322
+
Asn
GTT
[ENA]
¢þ
>WENV170575769
FPHM01000295
[FPHM] hydrothermal vent metagenome genome assembly, contig: NODE_32.; water
12624
12698
+
Asn
GTT
[ENA]
¢þ
>WENV170640694
JFJP01024011
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
12615
12541
-
Asn
GTT
[ENA]
¢þ
>WENV170640695
JFJP01024011
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
12509
12435
-
Asn
GTT
[ENA]
¢þ
>C181078319
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
347753
347827
+
Asn
GTT
-
¡û
>C181197066
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
1984762
1984688
-
Asn
GTT
-
¡û
>C181197067
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
1984657
1984583
-
Asn
GTT
-
¡û
>C181197068
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
1984559
1984485
-
Asn
GTT
-
¡û
>W09110080
ABUV01000001
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
443667
443741
+
Asn
GTT
[ENA]
¡û
>W141814462
JQGK01000022
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
1883
1809
-
Asn
GTT
[ENA]
¡û
>W141814489
JQGL01000061
Campylobacterota
Sulfuricurvum sp. MLSB [JQGL]
5734
5660
-
Asn
GTT
[ENA]
¡û
>W141814490
JQGL01000061
Campylobacterota
Sulfuricurvum sp. MLSB [JQGL]
5634
5560
-
Asn
GTT
[ENA]
¡û
>W1910744448
MIBP01000548
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8 [MIBP]
4128
4054
-
Asn
GTT
[ENA]
¡û
>W1910744449
MIBP01000548
Campylobacterota
Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8 [MIBP]
4027
3953
-
Asn
GTT
[ENA]
¡û
>W1910744492
MIBR01000098
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_02_FULL_43_45 [MIBR]
12608
12682
+
Asn
GTT
[ENA]
¡û
>W1910744493
MIBR01000098
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_02_FULL_43_45 [MIBR]
12709
12783
+
Asn
GTT
[ENA]
¡û
>W1910744512
MIBS01000381
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_43_5 [MIBS]
880
954
+
Asn
GTT
[ENA]
¡û
>W1910744513
MIBS01000381
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_43_5 [MIBS]
981
1055
+
Asn
GTT
[ENA]
¡û
>W1910744526
MIBT01000026
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_FULL_43_24 [MIBT]
21285
21359
+
Asn
GTT
[ENA]
¡û
>W1910744527
MIBT01000026
Campylobacterota
Sulfuricurvum sp. RIFCSPLOWO2_12_FULL_43_24 [MIBT]
21386
21460
+
Asn
GTT
[ENA]
¡û
>W1810628365
QICK01000008
Campylobacterota
Epsilonproteobacteria bacterium SCGC AD-308-I21 [QICK]
9320
9394
+
Asn
GTT
[ENA]
¡û
>C151018367
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
390855
390929
+
Asn
GTT
[Ensembl]
¡û
>C10111343
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
297952
297878
-
Asn
GTT
[Ensembl]
¡û
>W1511327850
JQIQ01000031
Campylobacterota
Sulfurovum sp. PC08-66 [JQIQ]
23351
23425
+
Asn
GTT
[ENA]
¡û
>W1511327851
JQIQ01000031
Campylobacterota
Sulfurovum sp. PC08-66 [JQIQ]
23449
23523
+
Asn
GTT
[ENA]
¡û
>W1511327904
JQIR01000112
Campylobacterota
Sulfurovum sp. FS06-10 [JQIR]
10042
10116
+
Asn
GTT
[ENA]
¡û
>W1511327925
JQIS01000051
Campylobacterota
Sulfurovum sp. FS08-3 [JQIS]
9545
9471
-
Asn
GTT
[ENA]
¡û
>W1511327926
JQIS01000051
Campylobacterota
Sulfurovum sp. FS08-3 [JQIS]
9445
9371
-
Asn
GTT
[ENA]
¡û
>C121011156
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
322018
322092
+
Asn
GTT
[Ensembl]
¡û
>C161002993
CP003920
Campylobacterota
Candidatus Sulfuricurvum sp. RIFRC-1 [CP003920]
1975495
1975569
+
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK