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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4025 (123 seq.)
>W1711005281
LQNM01000005
Bacillota
Pediococcus pentosaceus [LQNM]
83381
83288
-
Ser
GGA
[ENA]
¡û
>W1711068939
LSFE01000003
Bacillota
Pediococcus pentosaceus [LSFE]
182767
182674
-
Ser
GGA
[ENA]
¡û
>W1711329217
MBLT01000040
Bacillota
Limosilactobacillus reuteri [MBLT]
526
619
+
Ser
GGA
[ENA]
¡û
>W1711329338
MBLU01000190
Bacillota
Limosilactobacillus reuteri [MBLU]
263
356
+
Ser
GGA
[ENA]
¡û
>W1711433573
MIMH01000093
Bacillota
Limosilactobacillus reuteri [MIMH]
18427
18334
-
Ser
GGA
[ENA]
¡û
>W1711433745
MIMK01000058
Bacillota
Limosilactobacillus reuteri [MIMK]
30329
30236
-
Ser
GGA
[ENA]
¡û
>W1711499297
MKQH01000012
Bacillota
Limosilactobacillus reuteri [MKQH]
3941
4034
+
Ser
GGA
[ENA]
¡û
>W1711585757
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
340158
340251
+
Ser
GGA
[ENA]
¡û
>W1711685917
MSAS01000002
Bacillota
Lentilactobacillus parabuchneri [MSAS]
65407
65314
-
Ser
GGA
[ENA]
¡û
>W1711686074
MSAU01000028
Bacillota
Lentilactobacillus parabuchneri [MSAU]
285896
285803
-
Ser
GGA
[ENA]
¡û
>W1711686149
MSAW01000004
Bacillota
Lentilactobacillus parabuchneri [MSAW]
19040
18947
-
Ser
GGA
[ENA]
¡û
>W1711686245
MSAX01000022
Bacillota
Lentilactobacillus parabuchneri [MSAX]
690319
690226
-
Ser
GGA
[ENA]
¡û
>W1711686322
MSAZ01000002
Bacillota
Lentilactobacillus parabuchneri [MSAZ]
64051
63958
-
Ser
GGA
[ENA]
¡û
>W1711686380
MSBA01000002
Bacillota
Lentilactobacillus parabuchneri [MSBA]
64050
63957
-
Ser
GGA
[ENA]
¡û
>W1711686438
MSBB01000003
Bacillota
Lentilactobacillus parabuchneri [MSBB]
64051
63958
-
Ser
GGA
[ENA]
¡û
>W1711686534
MSBC01000021
Bacillota
Lentilactobacillus parabuchneri [MSBC]
690319
690226
-
Ser
GGA
[ENA]
¡û
>W1711686553
MSBD01000002
Bacillota
Lentilactobacillus parabuchneri [MSBD]
64638
64545
-
Ser
GGA
[ENA]
¡û
>W1711686672
MSBF01000002
Bacillota
Lentilactobacillus parabuchneri [MSBF]
24149
24056
-
Ser
GGA
[ENA]
¡û
>W1711686749
MSBG01000015
Bacillota
Lentilactobacillus parabuchneri [MSBG]
31809
31902
+
Ser
GGA
[ENA]
¡û
>W1711686882
MSBI01000019
Bacillota
Lentilactobacillus parabuchneri [MSBI]
278157
278064
-
Ser
GGA
[ENA]
¡û
>W1711942557
NBBG01000036
Bacillota
Limosilactobacillus reuteri [NBBG]
20573
20480
-
Ser
GGA
[ENA]
¡û
>W1711942625
NBBH01000127
Bacillota
Limosilactobacillus reuteri [NBBH]
3530
3437
-
Ser
GGA
[ENA]
¡û
>C171084053
CP018796
Bacillota
Lentilactobacillus parabuchneri FAM21731 [CP018796]
109670
109577
-
Ser
GGA
-
¡û
>C171086179
CP018906
Bacillota
Lentilactobacillus curieae CCTCC M 2011381 [CP018906]
60553
60460
-
Ser
GGA
-
¡û
>C171119457
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
623818
623911
+
Ser
GGA
-
¡û
>C171126475
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
613252
613345
+
Ser
GGA
-
¡û
>C171128139
LN906634
Bacillota
Limosilactobacillus reuteri subsp. suis ATCC 53608 [LN906634]
690900
690993
+
Ser
GGA
-
¡û
>C012579
CP000705
Bacillota
Limosilactobacillus reuteri subsp. reuteri DSM 20016 [CP000705]
1369855
1369764
-
Ser
GGA
[Ensembl]
¡û
>C017445
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
1210471
1210380
-
Ser
GGA
[Ensembl]
¡û
>w016208
AAPZ01000001
Bacillota
Limosilactobacillus reuteri 100-23 [AAPZ]
139781
139685
-
Ser
GGA
[ENA]
¡û
>WENV180279495
OBHX01043215
[OBHX] metagenome; feces
639
732
+
Ser
GGA
[ENA]
¢þ
>WENV180335114
OBLF01173748
[OBLF] metagenome; feces
146
239
+
Ser
GGA
[ENA]
¢þ
>WENV180350026
OBLO01242895
[OBLO] metagenome; feces
146
239
+
Ser
GGA
[ENA]
¢þ
>WENV181300367
OFHN01001071
[OFHN] mouse gut metagenome; faeces
20344
20251
-
Ser
GGA
[ENA]
¢þ
>WENV182260644
OHTJ01011914
[OHTJ] human gut metagenome; feces
557
650
+
Ser
GGA
[ENA]
¢þ
>W141226595
BAKI01000049
Bacillota
Lentilactobacillus farraginis JCM 14108 [BAKI]
280
373
+
Ser
GGA
[ENA]
¡û
>W141241958
CAHU01000005
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
124051
123958
-
Ser
GGA
[ENA]
¡û
>C08006191
AP007281
Bacillota
Limosilactobacillus reuteri subsp. reuteri JCM 1112 [AP007281]
1409473
1409380
-
Ser
GGA
[Ensembl]
¡û
>WENV183790386
PPYF01411284
[PPYF] human gut metagenome; stool from patient with Crohn's disease
48817
48724
-
Ser
GGA
[ENA]
¢þ
>W141402959
JDVW01000007
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
124417
124324
-
Ser
GGA
[ENA]
¡û
>WENV170659309
JXWR01003232
[JXWR] soil metagenome; rice field; ambient CO2
232
325
+
Ser
GGA
[ENA]
¢þ
>C181042804
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
460718
460625
-
Ser
GGA
-
¡û
>C181160231
CP027805
Bacillota
Limosilactobacillus reuteri WHH1689 [CP027805]
1385371
1385278
-
Ser
GGA
-
¡û
>C191023256
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
1131113
1131020
-
Ser
GGA
-
¡û
>W09101463
AAEV01000008
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
68026
67933
-
Ser
GGA
[ENA]
¡û
>W09122958
ACGP01000176
Bacillota
Lentilactobacillus hilgardii ATCC 8290 [ACGP]
13
106
+
Ser
GGA
[ENA]
¡û
>W09123427
ACGX01000123
Bacillota
Limosilactobacillus reuteri MM4-1A [ACGX]
49
142
+
Ser
GGA
[ENA]
¡û
>W141776713
JOKX01000024
Bacillota
Limosilactobacillus reuteri [JOKX]
2506
2413
-
Ser
GGA
[ENA]
¡û
>W141789684
JOSX01000012
Bacillota
Limosilactobacillus reuteri [JOSX]
6780
6687
-
Ser
GGA
[ENA]
¡û
>C141009514
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
1174417
1174324
-
Ser
GGA
[Ensembl]
¡û
>W1910871353
NCXA01000094
Bacillota
Lentilactobacillus parakefiri KR [NCXA]
1341
1248
-
Ser
GGA
[ENA]
¡û
>W1910872055
NDFJ01000060
Bacillota
Lentilactobacillus kefiri Olga [NDFJ]
168
261
+
Ser
GGA
[ENA]
¡û
>W1910902797
NGPC01000025
Bacillota
Limosilactobacillus reuteri 609e [NGPC]
37582
37489
-
Ser
GGA
[ENA]
¡û
>W1910902908
NGPD01000105
Bacillota
Limosilactobacillus reuteri 609d [NGPD]
1166
1073
-
Ser
GGA
[ENA]
¡û
>W1910903140
NGPH01000064
Bacillota
Limosilactobacillus reuteri 117w [NGPH]
187
280
+
Ser
GGA
[ENA]
¡û
>W1910903209
NGPI01000064
Bacillota
Limosilactobacillus reuteri 117r [NGPI]
187
280
+
Ser
GGA
[ENA]
¡û
>W1910903409
NGPL01000060
Bacillota
Limosilactobacillus reuteri 114h [NGPL]
4265
4172
-
Ser
GGA
[ENA]
¡û
>W1910903533
NGPN01000060
Bacillota
Limosilactobacillus reuteri 111v [NGPN]
211
304
+
Ser
GGA
[ENA]
¡û
>W1910903600
NGPO01000071
Bacillota
Limosilactobacillus reuteri 111l [NGPO]
211
304
+
Ser
GGA
[ENA]
¡û
>W1910903661
NGPP01000061
Bacillota
Limosilactobacillus reuteri 111f [NGPP]
1032
939
-
Ser
GGA
[ENA]
¡û
>W1910903733
NGPQ01000054
Bacillota
Limosilactobacillus reuteri 111b [NGPQ]
211
304
+
Ser
GGA
[ENA]
¡û
>W1910903835
NGPS01000080
Bacillota
Limosilactobacillus reuteri 107j [NGPS]
20713
20620
-
Ser
GGA
[ENA]
¡û
>W1910904402
NGQA01000086
Bacillota
Limosilactobacillus reuteri 105d [NGQA]
176
269
+
Ser
GGA
[ENA]
¡û
>W1910904624
NGQE01000025
Bacillota
Limosilactobacillus reuteri 103o [NGQE]
211
304
+
Ser
GGA
[ENA]
¡û
>W1911502660
OEPY01000001
Bacillota
[Lactobacillus] timonensis Marseille-P3825 [OEPY]
191812
191719
-
Ser
GGA
[ENA]
¡û
>W1911570344
PCZL01000037
Bacillota
Lactobacillus sp. UMNPBX10 [PCZL]
17723
17630
-
Ser
GGA
[ENA]
¡û
>W1911631249
PUFB01000004
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
247
340
+
Ser
GGA
[ENA]
¡û
>W1911631936
PUFL01000035
Bacillota
Lentilactobacillus parakefiri DSM 10551 [PUFL]
3250
3343
+
Ser
GGA
[ENA]
¡û
>W1911632160
PUFP01000022
Bacillota
Lentilactobacillus buchneri ATCC 4005 [PUFP]
217
310
+
Ser
GGA
[ENA]
¡û
>W1810000819
BEWQ01000002
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
12
105
+
Ser
GGA
[ENA]
¡û
>W1810084852
PESO01000036
Bacillota
Limosilactobacillus reuteri RC-14 [PESO]
16916
16823
-
Ser
GGA
[ENA]
¡û
>W1810452962
PZQO01000051
Bacillota
Limosilactobacillus reuteri E81 [PZQO]
70
163
+
Ser
GGA
[ENA]
¡û
>W1810472882
QAHC01000086
Bacillota
Limosilactobacillus reuteri DS14_10 [QAHC]
179
272
+
Ser
GGA
[ENA]
¡û
>W1810472900
QAHD01000012
Bacillota
Limosilactobacillus reuteri DS13_10 [QAHD]
64421
64328
-
Ser
GGA
[ENA]
¡û
>W1810488616
QAZM01000037
Bacillota
Limosilactobacillus reuteri DS17_10 [QAZM]
16944
16851
-
Ser
GGA
[ENA]
¡û
>W1810586556
QFFL01000001
Bacillota
Lentilactobacillus kefiri SGL 13 [QFFL]
2301281
2301374
+
Ser
GGA
[ENA]
¡û
>W1810598202
QGHU01000095
Bacillota
Limosilactobacillus reuteri LR4 [QGHU]
368
461
+
Ser
GGA
[ENA]
¡û
>W1810598343
QGHW01000118
Bacillota
Limosilactobacillus reuteri LR8 [QGHW]
204
297
+
Ser
GGA
[ENA]
¡û
>C151003028
AP014680
Bacillota
Paucilactobacillus hokkaidonensis JCM 18461 LOOC260 [AP014680]
731690
731783
+
Ser
GGA
[Ensembl]
¡û
>C151075604
CP011024
Bacillota
Limosilactobacillus reuteri IRT [CP011024]
1366338
1366245
-
Ser
GGA
[Ensembl]
¡û
>W10127348
AEEG01000002
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
658106
658013
-
Ser
GGA
[ENA]
¡û
>C11112228
CP002652
Bacillota
Lentilactobacillus buchneri NRRL B-30929 [CP002652]
834686
834779
+
Ser
GGA
[Ensembl]
¡û
>W1511393330
JTAL01000002
Bacillota
Lentilactobacillus curieae CCTCC M 2011381 [JTAL]
61
154
+
Ser
GGA
[ENA]
¡û
>W11134836
AEEG01000002
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
658106
658013
-
Ser
GGA
[ENA]
¡û
>W11184843
BACO01000071
Bacillota
Paucilactobacillus suebicus KCTC 3549 [BACO]
42
135
+
Ser
GGA
[ENA]
¡û
>C161077619
CP014786
Bacillota
Limosilactobacillus reuteri ZLR003 [CP014786]
1906238
1906331
+
Ser
GGA
[Ensembl]
¡û
>C161092324
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
861349
861442
+
Ser
GGA
[Ensembl]
¡û
>W121009525
AGEY01000164
Bacillota
Lentilactobacillus parafarraginis F0439 [AGEY]
142
49
-
Ser
GGA
[ENA]
¡û
>W121016905
AGRJ01000164
Bacillota
Lentilactobacillus kisonensis F0435 [AGRJ]
142
49
-
Ser
GGA
[ENA]
¡û
>W1610029118
AWTT01000026
Bacillota
Paucilactobacillus wasatchensis [AWTT]
26354
26261
-
Ser
GGA
[ENA]
¡û
>W1610031613
AYYY01000070
Bacillota
Paucilactobacillus vaccinostercus DSM 20634 [AYYY]
58129
58036
-
Ser
GGA
[ENA]
¡û
>W1610034845
AZEA01000024
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
43
136
+
Ser
GGA
[ENA]
¡û
>W1610034958
AZED01000014
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
70
163
+
Ser
GGA
[ENA]
¡û
>W1610035226
AZEI01000076
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [AZEI]
533700
533607
-
Ser
GGA
[ENA]
¡û
>W1610037342
AZFY01000156
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
16901
16808
-
Ser
GGA
[ENA]
¡û
>W1610037694
AZGF01000026
Bacillota
Paucilactobacillus suebicus DSM 5007 = KCTC 3549 [AZGF]
33736
33643
-
Ser
GGA
[ENA]
¡û
>W1610037913
AZGK01000001
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [AZGK]
41
134
+
Ser
GGA
[ENA]
¡û
>W1610044952
BBAY01000010
Bacillota
Paucilactobacillus hokkaidonensis JCM 18461 [BBAY]
73022
72929
-
Ser
GGA
[ENA]
¡û
>W1610045786
BBBV01000065
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
13
106
+
Ser
GGA
[ENA]
¡û
>W1610057790
BBZC01000016
Bacillota
Pediococcus pentosaceus [BBZC]
59788
59695
-
Ser
GGA
[ENA]
¡û
>W1610073233
BCVT01000098
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [BCVT]
12
105
+
Ser
GGA
[ENA]
¡û
>C131001703
CP003043
Bacillota
Lentilactobacillus buchneri subsp. silagei CD034 [CP003043]
859295
859388
+
Ser
GGA
[Ensembl]
¡û
>C131016716
CP006011
Bacillota
Limosilactobacillus reuteri I5007 [CP006011]
662978
663071
+
Ser
GGA
[Ensembl]
¡û
>W1610528582
JQBJ01000053
Bacillota
Lentilactobacillus parabuchneri [JQBJ]
51449
51356
-
Ser
GGA
[ENA]
¡û
>W1610529228
JQBX01000024
Bacillota
Pediococcus stilesii [JQBX]
36
129
+
Ser
GGA
[ENA]
¡û
>W1610529716
JQCH01000018
Bacillota
Paucilactobacillus hokkaidonensis [JQCH]
55163
55070
-
Ser
GGA
[ENA]
¡û
>W1610650090
LJIU01000006
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
29611
29518
-
Ser
GGA
[ENA]
¡û
>W1610855931
LQNM01000005
Bacillota
Pediococcus pentosaceus [LQNM]
83381
83288
-
Ser
GGA
[ENA]
¡û
>W1610909509
LSFE01000003
Bacillota
Pediococcus pentosaceus [LSFE]
182767
182674
-
Ser
GGA
[ENA]
¡û
>W1710026488
AWTT01000026
Bacillota
Paucilactobacillus wasatchensis [AWTT]
26354
26261
-
Ser
GGA
[ENA]
¡û
>W1710028540
AYYY01000070
Bacillota
Paucilactobacillus vaccinostercus DSM 20634 [AYYY]
58129
58036
-
Ser
GGA
[ENA]
¡û
>W1710032085
AZED01000014
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [AZED]
70
163
+
Ser
GGA
[ENA]
¡û
>W1710032353
AZEI01000076
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [AZEI]
533700
533607
-
Ser
GGA
[ENA]
¡û
>W1710034381
AZFY01000156
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
16901
16808
-
Ser
GGA
[ENA]
¡û
>W1710034733
AZGF01000026
Bacillota
Paucilactobacillus suebicus DSM 5007 = KCTC 3549 [AZGF]
33736
33643
-
Ser
GGA
[ENA]
¡û
>W1710042050
BBAY01000010
Bacillota
Paucilactobacillus hokkaidonensis JCM 18461 [BBAY]
73022
72929
-
Ser
GGA
[ENA]
¡û
>W1710042627
BBBV01000065
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [BBBV]
13
106
+
Ser
GGA
[ENA]
¡û
>W1710054489
BBZC01000016
Bacillota
Pediococcus pentosaceus [BBZC]
59788
59695
-
Ser
GGA
[ENA]
¡û
>W1710070351
BCVT01000098
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [BCVT]
12
105
+
Ser
GGA
[ENA]
¡û
>W1710081738
BDGB01000074
Bacillota
Lentilactobacillus parakefiri [BDGB]
907
1000
+
Ser
GGA
[ENA]
¡û
>W1710630172
JQBJ01000053
Bacillota
Lentilactobacillus parabuchneri [JQBJ]
51449
51356
-
Ser
GGA
[ENA]
¡û
>W1710630818
JQBX01000024
Bacillota
Pediococcus stilesii [JQBX]
36
129
+
Ser
GGA
[ENA]
¡û
>W1710631306
JQCH01000018
Bacillota
Paucilactobacillus hokkaidonensis [JQCH]
55163
55070
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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