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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.402609 (30 seq.)
>W1710927018
LOEX01000058
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
17214
17140
-
Phe
GAA
[ENA]
¡û
>W1711253304
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
1827714
1827640
-
Phe
GAA
[ENA]
¡û
>W1711261718
LYWZ01000020
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
277627
277701
+
Phe
GAA
[ENA]
¡û
>C171072716
CP018097
Alphaproteobacteria
Aurantiacibacter gangjinensis CGMCC 1.15024 [CP018097, CP018098]
2476329
2476403
+
Phe
GAA
-
¡û
>C171096172
CP019602
Alphaproteobacteria
Croceicoccus marinus E4A9 [CP019602]
1827714
1827640
-
Phe
GAA
-
¡û
>WENV182546457
OJBO01041971
[OJBO] seawater metagenome; Sea water
29
103
+
Phe
GAA
[ENA]
¡û
>WENV182547883
OJBU01001040
[OJBU] seawater metagenome; Sea water
2092
2018
-
Phe
GAA
[ENA]
¡û
>WENV182549249
OJBY01000051
[OJBY] seawater metagenome; Sea water
71889
71815
-
Phe
GAA
[ENA]
¡û
>WENV170136108
CENV01001816
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
313
239
-
Phe
GAA
[ENA]
¡û
>WENV170176422
CEOS01074387
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
11451
11525
+
Phe
GAA
[ENA]
¡û
>WENV170277666
CERQ01010723
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1580
1654
+
Phe
GAA
[ENA]
¡û
>WENV170901017
MDTD01163335
[MDTD] marine metagenome; seawater
2613
2539
-
Phe
GAA
[ENA]
¡û
>W1911767994
QXFM01000055
Alphaproteobacteria
Erythrobacter xanthus CCTCC AB 2015396 [QXFM]
4220
4146
-
Phe
GAA
[ENA]
¡û
>W1810779203
QQNB01000003
Alphaproteobacteria
Sphingomonas aracearum WZY 27 [QQNB]
424487
424413
-
Phe
GAA
[ENA]
¡û
>C151079660
CP011310
Alphaproteobacteria
Aurantiacibacter atlanticus s21-N3 [CP011310]
2331360
2331434
+
Phe
GAA
[Ensembl]
¡û
>W2011325516
QXFM01000055
Alphaproteobacteria
Erythrobacter xanthus CCTCC AB 2015396 [QXFM]
4220
4146
-
Phe
GAA
[ENA]
¡û
>W2011461036
RPFZ01000001
Alphaproteobacteria
Erythrobacter sp. HN-E23 [RPFZ]
799344
799418
+
Phe
GAA
[ENA]
¡û
>W2012439584
WTYW01000001
Alphaproteobacteria
Altererythrobacter aurantiacus MCCC 1A09962 [WTYW]
438111
438037
-
Phe
GAA
[ENA]
¡û
>C211128166
CP060052
Alphaproteobacteria
Croceicoccus marinus OT19 [CP060052]
1429979
1430053
+
Phe
GAA
-
¡û
>C231242179
CP087587
Alphaproteobacteria
Croceicoccus sp. Ery5 [CP087587]
2864412
2864338
-
Phe
GAA
-
¡û
>C231242195
CP087588
Alphaproteobacteria
Croceicoccus sp. Ery15 [CP087588]
99425
99499
+
Phe
GAA
-
¡û
>C231317777
CP092471
Alphaproteobacteria
Qipengyuania sp. PHS-Z21 [CP092471]
1828619
1828545
-
Phe
GAA
-
¡û
>C231555493
CP114054
Alphaproteobacteria
Aurantiacibacter sp. MUD11 [CP114054]
926374
926448
+
Phe
GAA
-
¡û
>W1511590556
LBHC01000001
Alphaproteobacteria
Aurantiacibacter gangjinensis K7-2 [LBHC]
1008852
1008926
+
Phe
GAA
[ENA]
¡û
>W1511591742
LBHU01000003
Alphaproteobacteria
Aurantiacibacter marinus HWDM-33 [LBHU]
290070
290144
+
Phe
GAA
[ENA]
¡û
>W1511629900
LDCP01000003
Alphaproteobacteria
Aurantiacibacter marinus KCTC 23554 [LDCP]
93731
93657
-
Phe
GAA
[ENA]
¡û
>C161098732
CP016545
Alphaproteobacteria
Paraurantiacibacter namhicola JCM 16345 [CP016545]
1143634
1143560
-
Phe
GAA
[Ensembl]
¡û
>W1610784560
LOEX01000058
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
17214
17140
-
Phe
GAA
[ENA]
¡û
>W1611017841
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
1827714
1827640
-
Phe
GAA
[ENA]
¡û
>W1611023693
LYWZ01000020
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
277627
277701
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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