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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.402713 (43 seq.)
>C171127309
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
83844
83770
-
Gln
TTG
-
¡û
>C171127318
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
644184
644258
+
Gln
TTG
-
¡û
>C171127362
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
196734
196660
-
Gln
TTG
-
¡û
>C171127371
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
696764
696838
+
Gln
TTG
-
¡û
>C171127397
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
436433
436507
+
Gln
TTG
-
¡û
>C026062
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
349563
349637
+
Gln
TTG
[Ensembl]
¡û
>w025454
AAZT01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
83969
84045
+
Gln
TTG
[ENA]
¡û
>w025426
AAZS01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
96603
96527
-
Gln
TTG
[ENA]
¡û
>w025400
AAZR01000010
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
5688
5764
+
Gln
TTG
[ENA]
¡û
>w025369
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
577500
577424
-
Gln
TTG
[ENA]
¡û
>w024362
AAYQ01000055
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
322
246
-
Gln
TTG
[ENA]
¡û
>w024360
AAYQ01000031
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
140
64
-
Gln
TTG
[ENA]
¡û
>w024337
AAYQ01000010
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
37134
37058
-
Gln
TTG
[ENA]
¡û
>w024327
AAYP01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
203191
203267
+
Gln
TTG
[ENA]
¡û
>w024301
AAYO01000008
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
38490
38566
+
Gln
TTG
[ENA]
¡û
>w024268
AAYN01000002
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
109684
109608
-
Gln
TTG
[ENA]
¡û
>w024244
AAYM01000004
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
47203
47279
+
Gln
TTG
[ENA]
¡û
>WENV180198216
OBAC01008194
[OBAC] human gut metagenome; ENVO:feces
746
672
-
Gln
TTG
[ENA]
¢þ
>WENV180225688
OBBO01000018
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
88159
88085
-
Gln
TTG
[ENA]
¢þ
>WENV180554102
OCJM01000079
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
493
419
-
Gln
TTG
[ENA]
¢þ
>WENV180822785
ODJV01002847
[ODJV] human metagenome; G_DNA_Posterior fornix
424
350
-
Gln
TTG
[ENA]
¢þ
>W08002242
ABER01000002
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
203777
203851
+
Gln
TTG
[ENA]
¡û
>W08002251
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
650558
650632
+
Gln
TTG
[ENA]
¡û
>W08002296
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
97023
96952
-
Gln
TTG
[ENA]
¡û
>W08002323
ABEV01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
37515
37444
-
Gln
TTG
[ENA]
¡û
>W08002826
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
86570
86499
-
Gln
TTG
[ENA]
¡û
>C08011087
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
349602
349676
+
Gln
TTG
[Ensembl]
¡û
>W141455538
JFDP01000023
Mycoplasmatota
Ureaplasma diversum NCTC 246 [JFDP]
10624
10550
-
Gln
TTG
[ENA]
¡û
>C191003506
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
168573
168647
+
Gln
TTG
-
¡û
>W141779609
JONZ01000003
Mycoplasmatota
Ureaplasma canigenitalium ATCC 51252 [JONZ]
157153
157079
-
Gln
TTG
[ENA]
¡û
>C09110772
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
347573
347647
+
Gln
TTG
[Ensembl]
¡û
>W1911824655
QZWO01000036
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
2316
2242
-
Gln
TTG
[ENA]
¡û
>W1810735659
QOKT01000006
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
174172
174246
+
Gln
TTG
[ENA]
¡û
>W1810735685
QOKU01000055
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
6012
6086
+
Gln
TTG
[ENA]
¡û
>W1810757235
QPHI01000041
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
9729
9803
+
Gln
TTG
[ENA]
¡û
>W1810757261
QPHJ01000049
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
9823
9897
+
Gln
TTG
[ENA]
¡û
>W1810757287
QPHK01000073
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
9751
9825
+
Gln
TTG
[ENA]
¡û
>C151002396
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
576856
576782
-
Gln
TTG
[Ensembl]
¡û
>C161022160
CP009770
Mycoplasmatota
Ureaplasma diversum ATCC 49782 [CP009770]
81307
81381
+
Gln
TTG
-
¡û
>W121060668
AJFX01000013
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
66280
66206
-
Gln
TTG
[ENA]
¡û
>W121060673
AJFY01000003
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
96843
96769
-
Gln
TTG
[ENA]
¡û
>W121060721
AJFZ01000009
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
106184
106110
-
Gln
TTG
[ENA]
¡û
>W121060748
AJGA01000012
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
66279
66205
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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