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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.402714 (38 seq.)
>C171127288
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
524347
524421
+
Asn
GTT
-
¡û
>C171127324
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
209423
209349
-
Asn
GTT
-
¡û
>C171127343
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
632324
632398
+
Asn
GTT
-
¡û
>C171127377
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
256254
256180
-
Asn
GTT
-
¡û
>C171127415
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
979
905
-
Asn
GTT
-
¡û
>C026069
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
637234
637160
-
Asn
GTT
[Ensembl]
¡û
>w025433
AAZT01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
421379
421455
+
Asn
GTT
[ENA]
¡û
>w025407
AAZS01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
266704
266628
-
Asn
GTT
[ENA]
¡û
>w025382
AAZR01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
70161
70085
-
Asn
GTT
[ENA]
¡û
>w025352
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
265923
265999
+
Asn
GTT
[ENA]
¡û
>w024352
AAYQ01000013
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
11608
11532
-
Asn
GTT
[ENA]
¡û
>w024307
AAYP01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
240388
240312
-
Asn
GTT
[ENA]
¡û
>w024279
AAYO01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
129098
129174
+
Asn
GTT
[ENA]
¡û
>w024252
AAYN01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
33914
33838
-
Asn
GTT
[ENA]
¡û
>w024223
AAYM01000001
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
184054
183978
-
Asn
GTT
[ENA]
¡û
>WENV180225653
OBBO01000003
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
153580
153654
+
Asn
GTT
[ENA]
¢þ
>WENV180554110
OCJM01000313
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
484
410
-
Asn
GTT
[ENA]
¢þ
>W08002222
ABER01000001
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
214196
214125
-
Asn
GTT
[ENA]
¡û
>W08002257
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
209974
209903
-
Asn
GTT
[ENA]
¡û
>W08002275
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
601177
601251
+
Asn
GTT
[ENA]
¡û
>W08002302
ABEV01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
497846
497920
+
Asn
GTT
[ENA]
¡û
>W08002806
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
589880
589954
+
Asn
GTT
[ENA]
¡û
>C08011094
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
637220
637149
-
Asn
GTT
[Ensembl]
¡û
>C191003514
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
460187
460113
-
Asn
GTT
-
¡û
>C191218161
LR214962
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
787698
787772
+
Asn
GTT
-
¡û
>C09110779
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
717896
717822
-
Asn
GTT
[Ensembl]
¡û
>W1911824667
QZWO01000066
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
111
185
+
Asn
GTT
[ENA]
¡û
>W1810735667
QOKT01000027
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
54351
54277
-
Asn
GTT
[ENA]
¡û
>W1810735700
QOKU01000123
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
3269
3195
-
Asn
GTT
[ENA]
¡û
>W1810757250
QPHI01000088
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
5765
5691
-
Asn
GTT
[ENA]
¡û
>W1810757277
QPHJ01000096
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
3149
3075
-
Asn
GTT
[ENA]
¡û
>W1810757301
QPHK01000136
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
4562
4488
-
Asn
GTT
[ENA]
¡û
>C151002377
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
285654
285728
+
Asn
GTT
[Ensembl]
¡û
>W11178969
AGFP01000019
Mycoplasmatota
Malacoplasma iowae 695 [AGFP]
912
838
-
Asn
GTT
[ENA]
¡û
>W121060650
AJFX01000009
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
91150
91076
-
Asn
GTT
[ENA]
¡û
>W121060681
AJFY01000009
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
117148
117074
-
Asn
GTT
[ENA]
¡û
>W121060705
AJFZ01000005
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
113271
113197
-
Asn
GTT
[ENA]
¡û
>W121060732
AJGA01000011
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
113353
113279
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK