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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4035 (131 seq.)
>W1711093767
LTFH01000055
Actinomycetota
Corynebacterium sp. HMSC062E11 HMSC062E11 [LTFH]
10669
10763
+
SeC(p)
TCA
[ENA]
¡û
>W1711094334
LTFV01000044
Actinomycetota
Corynebacterium sp. HMSC078A10 [LTFV]
9503
9597
+
SeC(p)
TCA
[ENA]
¡û
>W1711094363
LTFW01000021
Actinomycetota
Corynebacterium sp. HMSC074A09 HMSC074A09 [LTFW]
15940
16034
+
SeC(p)
TCA
[ENA]
¡û
>W1711094423
LTFX01000028
Actinomycetota
Corynebacterium sp. HMSC076G08 HMSC076G08 [LTFX]
13136
13230
+
SeC(p)
TCA
[ENA]
¡û
>W1711094960
LTGK01000054
Actinomycetota
Corynebacterium sp. HMSC068H04 HMSC068H04 [LTGK]
10578
10672
+
SeC(p)
TCA
[ENA]
¡û
>W1711095982
LTHJ01000007
Actinomycetota
Corynebacterium sp. HMSC065D07 [LTHJ]
7964
7870
-
SeC(p)
TCA
[ENA]
¡û
>W1711097255
LTIM01000069
Actinomycetota
Corynebacterium sp. HMSC072A02 [LTIM]
6278
6184
-
SeC(p)
TCA
[ENA]
¡û
>W1711098699
LTJU01000108
Actinomycetota
Corynebacterium sp. HMSC055A01 [LTJU]
9315
9409
+
SeC(p)
TCA
[ENA]
¡û
>W1711099749
LTKS01000094
Actinomycetota
Corynebacterium sp. HMSC070E08 [LTKS]
15931
16025
+
SeC(p)
TCA
[ENA]
¡û
>W1711099791
LTKT01000062
Actinomycetota
Corynebacterium sp. HMSC074E01 [LTKT]
44690
44596
-
SeC(p)
TCA
[ENA]
¡û
>W1711106088
LTRL01000052
Actinomycetota
Corynebacterium sp. HMSC036D02 [LTRL]
9399
9493
+
SeC(p)
TCA
[ENA]
¡û
>W1711106935
LTSH01000128
Actinomycetota
Corynebacterium sp. HMSC056F09 [LTSH]
16452
16546
+
SeC(p)
TCA
[ENA]
¡û
>W1711108157
LTTL01000044
Actinomycetota
Corynebacterium sp. HMSC034H07 HMSC034H07 [LTTL]
11886
11980
+
SeC(p)
TCA
[ENA]
¡û
>W1711108549
LTTW01000005
Actinomycetota
Corynebacterium sp. HMSC066C02 [LTTW]
41671
41577
-
SeC(p)
TCA
[ENA]
¡û
>W1711108727
LTTZ01000101
Actinomycetota
Corynebacterium sp. HMSC068G04 [LTTZ]
18007
18101
+
SeC(p)
TCA
[ENA]
¡û
>W1711109310
LTUN01000072
Actinomycetota
Corynebacterium sp. HMSC074C01 [LTUN]
44680
44586
-
SeC(p)
TCA
[ENA]
¡û
>W1711109464
LTUR01000053
Actinomycetota
Corynebacterium sp. HMSC078C09 [LTUR]
10683
10777
+
SeC(p)
TCA
[ENA]
¡û
>W1711109798
LTUY01000060
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
38264
38170
-
SeC(p)
TCA
[ENA]
¡û
>W1711110955
LTWA01000014
Actinomycetota
Corynebacterium sp. HMSC074H12 [LTWA]
28040
27946
-
SeC(p)
TCA
[ENA]
¡û
>W1711111614
LTWQ01000011
Actinomycetota
Corynebacterium sp. HMSC056E09 [LTWQ]
45049
44955
-
SeC(p)
TCA
[ENA]
¡û
>W1711112865
LTXU01000050
Actinomycetota
Corynebacterium sp. HMSC078H07 [LTXU]
87786
87692
-
SeC(p)
TCA
[ENA]
¡û
>W1711186420
LWOF01000026
Actinomycetota
Corynebacterium sp. HMSC06C06 [LWOF]
55771
55865
+
SeC(p)
TCA
[ENA]
¡û
>W1711186654
LWOJ01000083
Actinomycetota
Corynebacterium sp. HMSC05D08 [LWOJ]
65326
65420
+
SeC(p)
TCA
[ENA]
¡û
>W1711188297
LWQH01000086
Actinomycetota
Corynebacterium sp. HMSC069E04 [LWQH]
4942
4848
-
SeC(p)
TCA
[ENA]
¡û
>W1712077685
NGUZ01000003
Actinomycetota
Corynebacterium kefirresidentii OG2 [NGUZ]
103552
103458
-
SeC(p)
TCA
[ENA]
¡û
>C171117449
CP021252
Actinomycetota
Corynebacterium striatum KC-Na-01 [CP021252]
1845792
1845698
-
SeC(p)
TCA
-
¡û
>W131215735
ATVG01000002
Actinomycetota
Corynebacterium massiliense DSM 45435 [ATVG]
189922
189828
-
SeC(p)
TCA
[ENA]
¡û
>WENV180228519
OBCD01000050
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
26464
26558
+
SeC
TCA
[ENA]
¢þ
>WENV180554359
OCJN01000134
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
22461
22367
-
SeC
TCA
[ENA]
¢þ
>WENV180554368
OCJN01000166
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
2
96
+
SeC
TCA
[ENA]
¢þ
>WENV180766220
ODIE01000050
[ODIE] human metagenome; G_DNA_Anterior nares
18395
18301
-
SeC
TCA
[ENA]
¢þ
>WENV180836616
ODKF01005307
[ODKF] human metagenome; G_DNA_Anterior nares
333
427
+
SeC
TCA
[ENA]
¢þ
>WENV180844781
ODKO01004283
[ODKO] human metagenome; G_DNA_Anterior nares
129
35
-
SeC
TCA
[ENA]
¢þ
>WENV180857666
ODLB01055131
[ODLB] human metagenome; G_DNA_L_Retroauricular crease
85
179
+
SeC
TCA
[ENA]
¢þ
>WENV180878943
ODLY01008583
[ODLY] human metagenome; G_DNA_Anterior nares
230
136
-
SeC
TCA
[ENA]
¢þ
>WENV180916300
ODTC01002280
[ODTC] human metagenome; G_DNA_Anterior nares
730
824
+
SeC
TCA
[ENA]
¢þ
>WENV180937555
ODTW01009698
[ODTW] human metagenome; G_DNA_Anterior nares
335
241
-
SeC
TCA
[ENA]
¢þ
>WENV180966789
ODUR01010327
[ODUR] human metagenome; G_DNA_Anterior nares
356
262
-
SeC
TCA
[ENA]
¢þ
>WENV180989526
ODVM01000459
[ODVM] human metagenome; G_DNA_Anterior nares
1651
1745
+
SeC
TCA
[ENA]
¢þ
>WENV181000311
ODVU01003580
[ODVU] human metagenome; G_DNA_Anterior nares
534
628
+
SeC
TCA
[ENA]
¢þ
>WENV181010190
ODWG01007034
[ODWG] human metagenome; G_DNA_Anterior nares
178
272
+
SeC
TCA
[ENA]
¢þ
>WENV181025151
ODWY01026080
[ODWY] human metagenome; G_DNA_Anterior nares
67
161
+
SeC
TCA
[ENA]
¢þ
>WENV181030355
ODXG01003339
[ODXG] human metagenome; G_DNA_Anterior nares
21
115
+
SeC
TCA
[ENA]
¢þ
>WENV181030391
ODXH01003112
[ODXH] human metagenome; G_DNA_Anterior nares
58
152
+
SeC
TCA
[ENA]
¢þ
>WENV181040311
ODXR01000003
[ODXR] human metagenome; G_DNA_Anterior nares
38328
38422
+
SeC
TCA
[ENA]
¢þ
>WENV181119606
OEFI01001594
[OEFI] human metagenome; G_DNA_Anterior nares
684
778
+
SeC
TCA
[ENA]
¢þ
>WENV181124388
OEFR01005575
[OEFR] human metagenome; G_DNA_Anterior nares
100
194
+
SeC
TCA
[ENA]
¢þ
>WENV181131490
OEGC01000700
[OEGC] human metagenome; G_DNA_Anterior nares
1218
1124
-
SeC
TCA
[ENA]
¢þ
>WENV181212192
OFBN01000013
[OFBN] metagenome; hydrothermal vent
11503
11597
+
SeC
TCA
[ENA]
¢þ
>WENV181212316
OFBO01000285
[OFBO] metagenome; hydrothermal vent
1777
1683
-
SeC
TCA
[ENA]
¢þ
>WENV181212390
OFBP01000285
[OFBP] metagenome; hydrothermal vent
2110
2204
+
SeC
TCA
[ENA]
¢þ
>WENV181212467
OFBQ01000294
[OFBQ] metagenome; hydrothermal vent
1777
1683
-
SeC
TCA
[ENA]
¢þ
>WENV181212533
OFBR01000172
[OFBR] metagenome; hydrothermal vent
2110
2204
+
SeC
TCA
[ENA]
¢þ
>WENV181212617
OFBS01000240
[OFBS] metagenome; hydrothermal vent
1777
1683
-
SeC
TCA
[ENA]
¢þ
>WENV181212698
OFBT01000230
[OFBT] metagenome; hydrothermal vent
2569
2475
-
SeC
TCA
[ENA]
¢þ
>WENV181326300
OFLL01000081
[OFLL] metagenome; faeces
10530
10624
+
SeC
TCA
[ENA]
¢þ
>W141154887
AXLN01000010
Actinomycetota
Corynebacterium sp. KPL2004 [AXLN]
81920
82014
+
SeC(p)
TCA
[ENA]
¡û
>W141154941
AXLO01000005
Actinomycetota
Corynebacterium sp. KPL1998 [AXLO]
288269
288175
-
SeC(p)
TCA
[ENA]
¡û
>W141154970
AXLP01000002
Actinomycetota
Corynebacterium sp. KPL1996 [AXLP]
81960
82054
+
SeC(p)
TCA
[ENA]
¡û
>W141155095
AXLS01000001
Actinomycetota
Corynebacterium sp. KPL1986 [AXLS]
210838
210932
+
SeC(p)
TCA
[ENA]
¡û
>W141155192
AXLT01000007
Actinomycetota
Corynebacterium sp. KPL1860 [AXLT]
275701
275607
-
SeC(p)
TCA
[ENA]
¡û
>W141155290
AXLV01000005
Actinomycetota
Corynebacterium sp. KPL1857 [AXLV]
784735
784641
-
SeC(p)
TCA
[ENA]
¡û
>W141155320
AXLW01000006
Actinomycetota
Corynebacterium sp. KPL1856 [AXLW]
182075
182169
+
SeC(p)
TCA
[ENA]
¡û
>W141155413
AXLY01000003
Actinomycetota
Corynebacterium sp. KPL1824 [AXLY]
206496
206590
+
SeC(p)
TCA
[ENA]
¡û
>W141155490
AXLZ01000013
Actinomycetota
Corynebacterium sp. KPL1821 [AXLZ]
187024
187118
+
SeC(p)
TCA
[ENA]
¡û
>W141155541
AXMA01000010
Actinomycetota
Corynebacterium sp. KPL1818 [AXMA]
202517
202611
+
SeC(p)
TCA
[ENA]
¡û
>W141155585
AXMB01000007
Actinomycetota
Corynebacterium sp. KPL1817 [AXMB]
182943
183037
+
SeC(p)
TCA
[ENA]
¡û
>WENV182629284
OJKS01000026
[OJKS] metagenome; surface
41892
41986
+
SeC
TCA
[ENA]
¢þ
>WENV182640505
OJLB01022230
[OJLB] metagenome; surface
144
50
-
SeC
TCA
[ENA]
¢þ
>WENV182640726
OJLD01000102
[OJLD] metagenome; surface
927
1021
+
SeC
TCA
[ENA]
¢þ
>WENV182640817
OJLE01000031
[OJLE] metagenome; surface
76901
76995
+
SeC
TCA
[ENA]
¢þ
>WENV182641966
OJLL01000089
[OJLL] metagenome; surface
10663
10757
+
SeC
TCA
[ENA]
¢þ
>WENV182642067
OJLL01000407
[OJLL] metagenome; surface
3579
3485
-
SeC
TCA
[ENA]
¢þ
>WENV182642388
OJLM01004294
[OJLM] metagenome; surface
502
408
-
SeC
TCA
[ENA]
¢þ
>WENV182642782
OJLP01000954
[OJLP] metagenome; surface
1149
1243
+
SeC
TCA
[ENA]
¢þ
>WENV182643052
OJLS01000296
[OJLS] metagenome; surface
7857
7951
+
SeC
TCA
[ENA]
¢þ
>WENV182643942
OJLW01003648
[OJLW] metagenome; surface
1487
1393
-
SeC
TCA
[ENA]
¢þ
>WENV182644205
OJLW01012491
[OJLW] metagenome; surface
1617
1523
-
SeC
TCA
[ENA]
¢þ
>WENV182644868
OJLY01000597
[OJLY] metagenome; surface
2254
2348
+
SeC
TCA
[ENA]
¢þ
>WENV182644907
OJLY01000752
[OJLY] metagenome; surface
4728
4822
+
SeC
TCA
[ENA]
¢þ
>WENV182645964
OJLZ01015395
[OJLZ] metagenome; surface
803
897
+
SeC
TCA
[ENA]
¢þ
>WENV182646351
OJMA01005015
[OJMA] metagenome; surface
570
476
-
SeC
TCA
[ENA]
¢þ
>WENV182646580
OJMC01000006
[OJMC] metagenome; surface
64751
64845
+
SeC
TCA
[ENA]
¢þ
>WENV182672011
OJNM01079097
[OJNM] metagenome; surface
2
96
+
SeC
TCA
[ENA]
¢þ
>WENV182834011
OKEY01000142
[OKEY] human gut metagenome; human gut
4982
5076
+
SeC
TCA
[ENA]
¢þ
>WENV182835379
OKFN01000006
[OKFN] human gut metagenome; human gut
35467
35561
+
SeC
TCA
[ENA]
¢þ
>WENV183063513
OLIG01001345
[OLIG] metagenome; surface
447
353
-
SeC
TCA
[ENA]
¢þ
>WENV183090744
OLKE01000689
[OLKE] metagenome; surface
577
671
+
SeC
TCA
[ENA]
¢þ
>C181108809
CP024931
Actinomycetota
Corynebacterium striatum 215 [CP024931]
1105756
1105662
-
SeC
TCA
-
¡û
>C181108818
CP024932
Actinomycetota
Corynebacterium striatum 216 [CP024932]
241489
241583
+
SeC
TCA
-
¡û
>C181214831
LS483460
Actinomycetota
Corynebacterium minutissimum NCTC10288 [LS483460]
1696170
1696076
-
SeC
TCA
-
¡û
>C191207662
LR134339
Actinomycetota
Corynebacterium minutissimum NCTC10285 [LR134339]
1235223
1235317
+
Sec
TCA
-
¡û
>C191210945
LR134408
Actinomycetota
Corynebacterium segmentosum NCTC934 [LR134408]
884785
884879
+
Sec
TCA
-
¡û
>W09113470
ABYQ01000294
Actinomycetota
Corynebacterium pseudogenitalium ATCC 33035 [ABYQ]
38186
38280
+
SeC
TCA
[ENA]
¡û
>W09122421
ACGE01000002
Actinomycetota
Corynebacterium striatum ATCC 6940 [ACGE]
19737
19831
+
SeC
TCA
[ENA]
¡û
>W09127826
ACLH01000011
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
43665
43571
-
SeC
TCA
[ENA]
¡û
>W09135416
ACVP01000012
Actinomycetota
Corynebacterium tuberculostearicum SK141 [ACVP]
41806
41900
+
SeC
TCA
[ENA]
¡û
>W143003235
AXLU01000027
Actinomycetota
Corynebacterium sp. KPL1859 [AXLU]
132583
132677
+
SeC(p)
TCA
[ENA]
¡û
>W143003236
AXLX01000010
Actinomycetota
Corynebacterium sp. KPL1855 [AXLX]
36242
36148
-
SeC(p)
TCA
[ENA]
¡û
>W143003237
AXMC01000008
Actinomycetota
Corynebacterium sp. KPL1814 [AXMC]
131516
131610
+
SeC(p)
TCA
[ENA]
¡û
>W1930011709
LTBH01000017
Actinomycetota
Corynebacterium striatum 2247 [LTBH]
70650
70744
+
SeC
TCA
[ENA]
¡û
>W1930030402
NRIN01000022
Actinomycetota
Corynebacterium striatum 2296 [NRIN]
42866
42772
-
SeC
TCA
[ENA]
¡û
>W1910180448
BJLD01000002
Actinomycetota
Corynebacterium striatum NBRC 15291 [BJLD]
1061750
1061656
-
Sec
TCA
[ENA]
¡û
>W1910598675
LBCN01000043
Actinomycetota
Corynebacterium striatum 2023 [LBCN]
179207
179113
-
Sec
TCA
[ENA]
¡û
>W1910640602
LTBE01000027
Actinomycetota
Corynebacterium striatum 2023 [LTBE]
178507
178413
-
Sec
TCA
[ENA]
¡û
>W1910640660
LTBF01000026
Actinomycetota
Corynebacterium striatum 2230 [LTBF]
92534
92628
+
Sec
TCA
[ENA]
¡û
>W1910640705
LTBG01000014
Actinomycetota
Corynebacterium striatum 2245 [LTBG]
179466
179372
-
Sec
TCA
[ENA]
¡û
>C09102733
CP001601
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 DSM 44827; ATCC 700975 [CP001601]
1067362
1067456
+
SeC
TCA
[Ensembl]
¡û
>W1911204377
NRIL01000018
Actinomycetota
Corynebacterium striatum 2130 [NRIL]
86097
86003
-
Sec
TCA
[ENA]
¡û
>W1911204448
NRIM01000027
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
68720
68626
-
Sec
TCA
[ENA]
¡û
>W1911204460
NRIM01000059
Actinomycetota
Corynebacterium striatum 2237 [NRIM]
8723
8817
+
Sec
TCA
[ENA]
¡û
>W1911204555
NRIO01000016
Actinomycetota
Corynebacterium striatum 2308 [NRIO]
184616
184522
-
Sec
TCA
[ENA]
¡û
>W1911204627
NRIP01000022
Actinomycetota
Corynebacterium striatum 2425 [NRIP]
123189
123095
-
Sec
TCA
[ENA]
¡û
>W1911596635
PNHI01000003
Actinomycetota
Corynebacterium aurimucosum UMB1300 [PNHI]
215444
215538
+
Sec
TCA
[ENA]
¡û
>W1810187566
PKHR01000004
Actinomycetota
Corynebacterium aurimucosum UMB0043 [PKHR]
216717
216811
+
Sec
TCA
[ENA]
¡û
>C151073114
CP010827
Actinomycetota
Corynebacterium singulare IBS B52218 [CP010827]
1103041
1103135
+
SeC
TCA
[Ensembl]
¡û
>W1510562557
CTEG01000034
Actinomycetota
Corynebacterium striatum BM4687 [CTEG]
53354
53260
-
SeC
TCA
[ENA]
¡û
>W1511365545
JSEF01000009
Actinomycetota
Corynebacterium minutissimum ATCC 23348 [JSEF]
46587
46681
+
SeC
TCA
[ENA]
¡û
>W1511438070
JULV01000122
Actinomycetota
Corynebacterium striatum 963_CAUR [JULV]
32310
32216
-
SeC
TCA
[ENA]
¡û
>W1511438134
JULW01000126
Actinomycetota
Corynebacterium striatum 962_CAUR [JULW]
33222
33128
-
SeC
TCA
[ENA]
¡û
>W1511438562
JUMN01000081
Actinomycetota
Corynebacterium aurimucosum 945_CAUR [JUMN]
7998
7904
-
SeC
TCA
[ENA]
¡û
>W1511443073
JUSN01000067
Actinomycetota
Corynebacterium striatum 797_CAUR [JUSN]
66748
66842
+
SeC
TCA
[ENA]
¡û
>W1511449437
JVBA01000037
Actinomycetota
Corynebacterium striatum 587_CAUR [JVBA]
117232
117138
-
SeC
TCA
[ENA]
¡û
>W1511451252
JVCW01000016
Actinomycetota
Corynebacterium striatum 542_CAUR [JVCW]
36892
36798
-
SeC
TCA
[ENA]
¡û
>W1511467855
JVTL01000055
Actinomycetota
Corynebacterium striatum 1329_CAUR [JVTL]
5183
5089
-
SeC
TCA
[ENA]
¡û
>W1511467949
JVTN01000082
Actinomycetota
Corynebacterium striatum 1327_CAUR [JVTN]
66178
66272
+
SeC
TCA
[ENA]
¡û
>W1511471102
JVXO01000045
Actinomycetota
Corynebacterium aurimucosum 1237_CAUR [JVXO]
168968
168874
-
SeC
TCA
[ENA]
¡û
>W1511585520
LAYQ01000013
Actinomycetota
Corynebacterium minutissimum 1941 [LAYQ]
110471
110565
+
SeC
TCA
[ENA]
¡û
>W1511585559
LAYR01000003
Actinomycetota
Corynebacterium striatum 1961 [LAYR]
73713
73807
+
SeC
TCA
[ENA]
¡û
>W1610068169
BCRC01000013
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
37578
37484
-
SeC(p)
TCA
[ENA]
¡û
>W1710065542
BCRC01000013
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
37578
37484
-
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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