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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403605 (48 seq.)
>W131051976
AMYG01000035
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
49759
49685
-
Glu
TTC
[ENA]
¡û
>W131167581
ARDJ01000022
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
211025
210951
-
Glu
TTC
[ENA]
¡û
>W131052009
AMYG01000069
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
5
79
+
Glu
TTC
[ENA]
¡û
>C025839
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
2287790
2287716
-
Glu
TTC
[Ensembl]
¡û
>w018973
AATV01000020
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
6933
6857
-
Glu
TTC
[ENA]
¡û
>w010190
AAKQ01000006
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
58240
58316
+
Glu
TTC
[ENA]
¡û
>W141092616
AVAF01000162
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
22240
22314
+
Glu
TTC
[ENA]
¡û
>WENV181226208
OFDK01000207
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
2565
2639
+
Glu
TTC
[ENA]
¢þ
>C08010949
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
820856
820930
+
Glu
TTC
[Ensembl]
¡û
>C08011033
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
336552
336626
+
Glu
TTC
[Ensembl]
¡û
>W141276484
JADV01000013
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
48267
48193
-
Glu
TTC
[ENA]
¡û
>W141276499
JADV01000026
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
339
413
+
Glu
TTC
[ENA]
¡û
>WENV170675646
LDZP01000178
[LDZP] terrestrial metagenome; oil reservoir sample I1
18928
18854
-
Glu
TTC
[ENA]
¢þ
>WENV170676245
LDZR01001844
[LDZR] terrestrial metagenome; oil reservoir sample K2
13698
13624
-
Glu
TTC
[ENA]
¢þ
>WENV170676889
LDZS01003015
[LDZS] terrestrial metagenome; oil reservoir sample K3
3098
3024
-
Glu
TTC
[ENA]
¢þ
>C191108117
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2858665
2858591
-
Glu
TTC
-
¡û
>W09112141
ABXP01000107
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
2679
2753
+
Glu
TTC
[ENA]
¡û
>W09133522
ACPF01000014
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
3689
3763
+
Glu
TTC
[ENA]
¡û
>W09134133
ACQZ01000013
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
34169
34095
-
Glu
TTC
[ENA]
¡û
>W09135046
ACVH01000015
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
13433
13507
+
Glu
TTC
[ENA]
¡û
>W09135153
ACVK01000021
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
28595
28521
-
Glu
TTC
[ENA]
¡û
>W09135864
ACXP01000019
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
20267
20341
+
Glu
TTC
[ENA]
¡û
>C151045311
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
2046247
2046173
-
Glu
TTC
[Ensembl]
¡û
>W10105933
ACXY01000015
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
16277
16351
+
Glu
TTC
[ENA]
¡û
>W10120489
ADXD01000022
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
37870
37796
-
Glu
TTC
[ENA]
¡û
>W10120516
ADXD01000095
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
521
595
+
Glu
TTC
[ENA]
¡û
>C10113395
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
2111318
2111244
-
Glu
TTC
[Ensembl]
¡û
>C10113449
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
2030752
2030678
-
Glu
TTC
[Ensembl]
¡û
>W11108256
ACXY01000015
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
16277
16351
+
Glu
TTC
[ENA]
¡û
>W1511275104
JOOI01000002
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
811492
811566
+
Glu
TTC
[ENA]
¡û
>C11122460
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
331969
332043
+
Glu
TTC
[Ensembl]
¡û
>C11122722
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
2093726
2093652
-
Glu
TTC
[Ensembl]
¡û
>C11123246
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2382493
2382419
-
Glu
TTC
[Ensembl]
¡û
>W11127098
ADXD01000022
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
37870
37796
-
Glu
TTC
[ENA]
¡û
>W11127125
ADXD01000095
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
521
595
+
Glu
TTC
[ENA]
¡û
>W11152685
AEYS01000024
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
21831
21757
-
Glu
TTC
[ENA]
¡û
>W1610043651
BAZY01000014
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
13397
13471
+
Glu
TTC
[ENA]
¡û
>W121068088
AJUD01000007
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
71677
71603
-
Glu
TTC
[ENA]
¡û
>W1610612278
LGEO01000015
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
18928
18854
-
Glu
TTC
[ENA]
¡û
>W1610612647
LGEY01000036
Bacillota
Caldanaerobacter subterraneus [LGEY]
13698
13624
-
Glu
TTC
[ENA]
¡û
>W1610613185
LGFN01000119
Bacillota
Caldanaerobacter subterraneus [LGFN]
3098
3024
-
Glu
TTC
[ENA]
¡û
>W1710040811
BAZY01000014
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
13397
13471
+
Glu
TTC
[ENA]
¡û
>W1710515348
FNBS01000114
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
1907
1981
+
Glu
TTC
[ENA]
¡û
>W1710560355
FONI01000006
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
47974
47900
-
Glu
TTC
[ENA]
¡û
>W1710583319
FQUR01000014
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
75019
74945
-
Glu
TTC
[ENA]
¡û
>W1710733784
LGEO01000015
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
18928
18854
-
Glu
TTC
[ENA]
¡û
>W1710733968
LGEY01000036
Bacillota
Caldanaerobacter subterraneus [LGEY]
13698
13624
-
Glu
TTC
[ENA]
¡û
>W1710734392
LGFN01000119
Bacillota
Caldanaerobacter subterraneus [LGFN]
3098
3024
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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