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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403606 (87 seq.)
>W131218726
ATXZ01000003
Bacillota
Caldanaerobius polysaccharolyticus DSM 13641 [ATXZ]
120923
120995
+
Asn
GTT
[ENA]
¡û
>W1711430577
MIJE01000001
Bacillota
Desulfuribacillus alkaliarsenatis [MIJE]
440774
440848
+
Asn
GTT
[ENA]
¡û
>W1711705084
MSQD01000001
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
22568
22494
-
Asn
GTT
[ENA]
¡û
>W1711705119
MSQD01000026
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
12170
12096
-
Asn
GTT
[ENA]
¡û
>W1711705121
MSQD01000030
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
140
214
+
Asn
GTT
[ENA]
¡û
>W131218767
ATXZ01000014
Bacillota
Caldanaerobius polysaccharolyticus DSM 13641 [ATXZ]
198107
198033
-
Asn
GTT
[ENA]
¡û
>W131167542
ARDJ01000001
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
147804
147878
+
Asn
GTT
[ENA]
¡û
>W131167585
ARDJ01000022
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
96522
96448
-
Asn
GTT
[ENA]
¡û
>w018994
AATV01000070
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
5260
5336
+
Asn
GTT
[ENA]
¡û
>w018988
AATV01000063
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
8751
8675
-
Asn
GTT
[ENA]
¡û
>w010165
AAKQ01000001
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
178852
178776
-
Asn
GTT
[ENA]
¡û
>w010163
AAKQ01000001
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
220671
220595
-
Asn
GTT
[ENA]
¡û
>WENV181226227
OFDK01000268
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
68
142
+
Asn
GTT
[ENA]
¢þ
>WENV181404275
OGBZ01009684
[OGBZ] sediment metagenome; hot spring sediment
521
595
+
Asn
GTT
[ENA]
¢þ
>W141193978
AYSN01000059
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
16177
16103
-
Asn
GTT
[ENA]
¡û
>W141193996
AYSN01000072
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
4
78
+
Asn
GTT
[ENA]
¡û
>W141193998
AYSN01000080
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
4
78
+
Asn
GTT
[ENA]
¡û
>W141238348
BBKT01000036
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
14509
14435
-
Asn
GTT
[ENA]
¡û
>W141238369
BBKT01000054
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
2031
2105
+
Asn
GTT
[ENA]
¡û
>W141238373
BBKT01000088
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
920
846
-
Asn
GTT
[ENA]
¡û
>C08010951
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
929494
929568
+
Asn
GTT
[Ensembl]
¡û
>C08010977
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
1816211
1816140
-
Asn
GTT
[Ensembl]
¡û
>C08011037
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
443884
443958
+
Asn
GTT
[Ensembl]
¡û
>C08011061
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
2261786
2261715
-
Asn
GTT
[Ensembl]
¡û
>W141276491
JADV01000023
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
113
187
+
Asn
GTT
[ENA]
¡û
>W141276498
JADV01000026
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
258
332
+
Asn
GTT
[ENA]
¡û
>WENV170675622
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
229560
229486
-
Asn
GTT
[ENA]
¢þ
>WENV170675670
LDZP01000247
[LDZP] terrestrial metagenome; oil reservoir sample I1
24
98
+
Asn
GTT
[ENA]
¢þ
>C191108096
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
461384
461458
+
Asn
GTT
-
¡û
>C191108121
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2740175
2740101
-
Asn
GTT
-
¡û
>W09134140
ACQZ01000022
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
720
794
+
Asn
GTT
[ENA]
¡û
>W09134152
ACQZ01000051
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
9535
9461
-
Asn
GTT
[ENA]
¡û
>W09135876
ACXP01000031
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
12
86
+
Asn
GTT
[ENA]
¡û
>W09135890
ACXP01000059
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
4071
3997
-
Asn
GTT
[ENA]
¡û
>W1910747714
MINB01000020
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
36222
36148
-
Asn
GTT
[ENA]
¡û
>W1910976707
NKHD01000016
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
22005
21931
-
Asn
GTT
[ENA]
¡û
>W1910976742
NKHD01000052
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
12321
12247
-
Asn
GTT
[ENA]
¡û
>W1910976744
NKHD01000055
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
13038
12964
-
Asn
GTT
[ENA]
¡û
>C151045284
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
62990
63064
+
Asn
GTT
[Ensembl]
¡û
>C151045315
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1939891
1939817
-
Asn
GTT
[Ensembl]
¡û
>W10105953
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
70
144
+
Asn
GTT
[ENA]
¡û
>W10105961
ACXY01000036
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
19015
18941
-
Asn
GTT
[ENA]
¡û
>W10120491
ADXD01000032
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
27909
27835
-
Asn
GTT
[ENA]
¡û
>W10120515
ADXD01000095
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
440
514
+
Asn
GTT
[ENA]
¡û
>W10120521
ADXD01000100
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
3273
3347
+
Asn
GTT
[ENA]
¡û
>C10113397
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1987258
1987184
-
Asn
GTT
[Ensembl]
¡û
>C10113813
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
66763
66837
+
Asn
GTT
[Ensembl]
¡û
>C10113822
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
454332
454406
+
Asn
GTT
[Ensembl]
¡û
>C10113845
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
2004470
2004396
-
Asn
GTT
[Ensembl]
¡û
>W1510647601
CVPE01000004
Bacillota
Rubeoparvulum massiliense mt6 [CVPE]
245406
245332
-
Asn
GTT
[ENA]
¡û
>W11108276
ACXY01000032
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
70
144
+
Asn
GTT
[ENA]
¡û
>W11108284
ACXY01000036
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
19015
18941
-
Asn
GTT
[ENA]
¡û
>W1511275076
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
1473180
1473106
-
Asn
GTT
[ENA]
¡û
>W1511275111
JOOI01000002
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
385458
385384
-
Asn
GTT
[ENA]
¡û
>C11122464
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
439300
439374
+
Asn
GTT
[Ensembl]
¡û
>C11122488
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
2248929
2248855
-
Asn
GTT
[Ensembl]
¡û
>C11122690
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
49029
49103
+
Asn
GTT
[Ensembl]
¡û
>C11122726
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1984887
1984813
-
Asn
GTT
[Ensembl]
¡û
>C11123221
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
70747
70821
+
Asn
GTT
[Ensembl]
¡û
>C11123250
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2270468
2270394
-
Asn
GTT
[Ensembl]
¡û
>C11123279
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
65658
65732
+
Asn
GTT
[Ensembl]
¡û
>C11123288
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
378277
378351
+
Asn
GTT
[Ensembl]
¡û
>C11123303
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
873319
873393
+
Asn
GTT
[Ensembl]
¡û
>W11127100
ADXD01000032
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
27909
27835
-
Asn
GTT
[ENA]
¡û
>W11127124
ADXD01000095
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
440
514
+
Asn
GTT
[ENA]
¡û
>W11127130
ADXD01000100
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
3273
3347
+
Asn
GTT
[ENA]
¡û
>W11150420
AEVQ01000002
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
242750
242676
-
Asn
GTT
[ENA]
¡û
>W11150436
AEVQ01000004
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
269740
269814
+
Asn
GTT
[ENA]
¡û
>W11150460
AEVQ01000017
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
24876
24802
-
Asn
GTT
[ENA]
¡û
>W11152650
AEYS01000010
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
6968
6894
-
Asn
GTT
[ENA]
¡û
>W11152666
AEYS01000014
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
25628
25554
-
Asn
GTT
[ENA]
¡û
>C121007638
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
2526286
2526212
-
Asn
GTT
[Ensembl]
¡û
>W121068077
AJUD01000005
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
123718
123644
-
Asn
GTT
[ENA]
¡û
>W121068095
AJUD01000008
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
337530
337604
+
Asn
GTT
[ENA]
¡û
>C131001900
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
52652
52726
+
Asn
GTT
[Ensembl]
¡û
>C131001909
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
409702
409776
+
Asn
GTT
[Ensembl]
¡û
>C131001933
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
1999819
1999745
-
Asn
GTT
[Ensembl]
¡û
>W1610612254
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
229560
229486
-
Asn
GTT
[ENA]
¡û
>W1610612302
LGEO01000084
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
24
98
+
Asn
GTT
[ENA]
¡û
>W1710515309
FNBS01000018
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
8259
8185
-
Asn
GTT
[ENA]
¡û
>W1710515316
FNBS01000033
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
327
401
+
Asn
GTT
[ENA]
¡û
>W1710560356
FONI01000007
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
274
348
+
Asn
GTT
[ENA]
¡û
>W1710560387
FONI01000052
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
325
399
+
Asn
GTT
[ENA]
¡û
>W1710583289
FQUR01000009
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
218537
218463
-
Asn
GTT
[ENA]
¡û
>W1710583327
FQUR01000029
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
318
392
+
Asn
GTT
[ENA]
¡û
>W1710733760
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
229560
229486
-
Asn
GTT
[ENA]
¡û
>W1710733808
LGEO01000084
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
24
98
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK