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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403662 (102 seq.)
>W1711111024
LTWB01000043
Fusobacteriota
Fusobacterium sp. HMSC065F01 [LTWB]
111
37
-
Glu
TTC
[ENA]
¡û
>W1712084815
NHRT01000001
Fusobacteriota
Fusobacterium polymorphum subsp. polymorphum [NHRT]
1697209
1697283
+
Glu
TTC
[ENA]
¡û
>W141000219
ACIF01000010
Fusobacteriota
Fusobacterium periodonticum D10 [ACIF]
7715
7641
-
Glu
TTC
[ENA]
¡û
>WENV180551649
OCJG01007034
[OCJG] human oral metagenome; human oral
335
409
+
Glu
TTC
[ENA]
¢þ
>WENV180696547
ODCT01011805
[ODCT] human metagenome; G_DNA_Buccal mucosa
327
253
-
Glu
TTC
[ENA]
¢þ
>WENV180721676
ODGL01005245
[ODGL] human metagenome; G_DNA_Subgingival plaque
302
228
-
Glu
TTC
[ENA]
¢þ
>WENV180746163
ODHM01011281
[ODHM] human metagenome; G_DNA_Buccal mucosa
326
400
+
Glu
TTC
[ENA]
¢þ
>WENV180759782
ODHY01159064
[ODHY] human metagenome; G_DNA_Buccal mucosa
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180765277
ODIB01065534
[ODIB] human metagenome; G_DNA_Supragingival plaque
223
149
-
Glu
TTC
[ENA]
¢þ
>WENV180766013
ODID01016451
[ODID] human metagenome; G_DNA_Attached/Keratinized gingiva
195
121
-
Glu
TTC
[ENA]
¢þ
>WENV180770049
ODIG01338912
[ODIG] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180773779
ODIJ01002151
[ODIJ] human metagenome; G_DNA_Tongue dorsum
60
134
+
Glu
TTC
[ENA]
¢þ
>WENV180775161
ODIJ01249166
[ODIJ] human metagenome; G_DNA_Tongue dorsum
6
80
+
Glu
TTC
[ENA]
¢þ
>WENV180776984
ODIK01275397
[ODIK] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180783026
ODIQ01001015
[ODIQ] human metagenome; G_DNA_Tongue dorsum
5639
5713
+
Glu
TTC
[ENA]
¢þ
>WENV180791144
ODIT01123861
[ODIT] human metagenome; G_DNA_Tongue dorsum
6
80
+
Glu
TTC
[ENA]
¢þ
>WENV180802460
ODJE01002189
[ODJE] human metagenome; G_DNA_Tongue dorsum
328
254
-
Glu
TTC
[ENA]
¢þ
>WENV180806162
ODJH01003181
[ODJH] human metagenome; G_DNA_Tongue dorsum
436
510
+
Glu
TTC
[ENA]
¢þ
>WENV180807234
ODJI01000947
[ODJI] human metagenome; G_DNA_Tongue dorsum
7795
7869
+
Glu
TTC
[ENA]
¢þ
>W141078955
ATKD01000015
Fusobacteriota
Fusobacterium animalis subsp. animalis ChDC F324 [ATKD]
77
3
-
Glu
TTC
[ENA]
¡û
>WENV180810265
ODJK01191615
[ODJK] human metagenome; G_DNA_Subgingival plaque
60
134
+
Glu
TTC
[ENA]
¢þ
>WENV180810315
ODJK01217604
[ODJK] human metagenome; G_DNA_Subgingival plaque
147
221
+
Glu
TTC
[ENA]
¢þ
>WENV180815940
ODJP01002816
[ODJP] human metagenome; G_DNA_Tongue dorsum
328
254
-
Glu
TTC
[ENA]
¢þ
>WENV180830806
ODKB01013901
[ODKB] human metagenome; G_DNA_Tongue dorsum
327
253
-
Glu
TTC
[ENA]
¢þ
>WENV180853599
ODKW01211872
[ODKW] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180855950
ODKZ01000584
[ODKZ] human metagenome; G_DNA_Tongue dorsum
3202
3276
+
Glu
TTC
[ENA]
¢þ
>WENV180859025
ODLC01135414
[ODLC] human metagenome; G_DNA_Tongue dorsum
116
42
-
Glu
TTC
[ENA]
¢þ
>WENV180863586
ODLH01000637
[ODLH] human metagenome; G_DNA_Tongue dorsum
8853
8779
-
Glu
TTC
[ENA]
¢þ
>WENV180866507
ODLJ01027991
[ODLJ] human metagenome; G_DNA_Tongue dorsum
327
253
-
Glu
TTC
[ENA]
¢þ
>WENV180877733
ODLV01001721
[ODLV] human metagenome; G_DNA_Tongue dorsum
7710
7784
+
Glu
TTC
[ENA]
¢þ
>WENV180879900
ODLZ01003674
[ODLZ] human metagenome; G_DNA_Tongue dorsum
652
726
+
Glu
TTC
[ENA]
¢þ
>WENV180883852
ODMC01018714
[ODMC] human metagenome; G_DNA_Tongue dorsum
1529
1603
+
Glu
TTC
[ENA]
¢þ
>WENV180902485
ODOK01064760
[ODOK] human metagenome; G_DNA_Tongue dorsum
239
313
+
Glu
TTC
[ENA]
¢þ
>WENV180920074
ODTH01001166
[ODTH] human metagenome; G_DNA_Tongue dorsum
5777
5851
+
Glu
TTC
[ENA]
¢þ
>WENV180932794
ODTP01216246
[ODTP] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180936896
ODTV01000953
[ODTV] human metagenome; G_DNA_Buccal mucosa
1161
1235
+
Glu
TTC
[ENA]
¢þ
>WENV180937252
ODTV01039230
[ODTV] human metagenome; G_DNA_Buccal mucosa
6
80
+
Glu
TTC
[ENA]
¢þ
>WENV180945914
ODUD01000665
[ODUD] human metagenome; G_DNA_Tongue dorsum
9453
9527
+
Glu
TTC
[ENA]
¢þ
>WENV180950433
ODUG01226820
[ODUG] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180968505
ODUT01031511
[ODUT] human metagenome; G_DNA_Tongue dorsum
327
253
-
Glu
TTC
[ENA]
¢þ
>WENV180977576
ODUZ01001984
[ODUZ] human metagenome; G_DNA_Tongue dorsum
7807
7881
+
Glu
TTC
[ENA]
¢þ
>WENV180986409
ODVJ01174853
[ODVJ] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV180989255
ODVL01079613
[ODVL] human metagenome; G_DNA_Tongue dorsum
61
135
+
Glu
TTC
[ENA]
¢þ
>WENV181011258
ODWI01015442
[ODWI] human metagenome; G_DNA_Tongue dorsum
631
705
+
Glu
TTC
[ENA]
¢þ
>WENV181034318
ODXN01184862
[ODXN] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV181038724
ODXQ01003892
[ODXQ] human metagenome; G_DNA_Tongue dorsum
8002
7928
-
Glu
TTC
[ENA]
¢þ
>WENV181044041
ODXV01002366
[ODXV] human metagenome; G_DNA_Tongue dorsum
5623
5549
-
Glu
TTC
[ENA]
¢þ
>WENV181044648
ODXV01021470
[ODXV] human metagenome; G_DNA_Tongue dorsum
956
1030
+
Glu
TTC
[ENA]
¢þ
>WENV181046370
ODXW01025816
[ODXW] human metagenome; G_DNA_Tongue dorsum
32
106
+
Glu
TTC
[ENA]
¢þ
>WENV181052655
ODYG01008653
[ODYG] human metagenome; G_DNA_Tongue dorsum
537
611
+
Glu
TTC
[ENA]
¢þ
>WENV181057892
ODYL01001667
[ODYL] human metagenome; G_DNA_Tongue dorsum
4984
5058
+
Glu
TTC
[ENA]
¢þ
>WENV181059466
ODYM01001261
[ODYM] human metagenome; G_DNA_Tongue dorsum
7808
7882
+
Glu
TTC
[ENA]
¢þ
>WENV181074312
OEAO01005650
[OEAO] human metagenome; G_DNA_Tongue dorsum
4906
4980
+
Glu
TTC
[ENA]
¢þ
>WENV181085141
OEAX01001887
[OEAX] human metagenome; G_DNA_Tongue dorsum
7861
7935
+
Glu
TTC
[ENA]
¢þ
>WENV181098294
OECA01187788
[OECA] human metagenome; G_DNA_Tongue dorsum
76
2
-
Glu
TTC
[ENA]
¢þ
>WENV181108832
OEEJ01000486
[OEEJ] human metagenome; G_DNA_Tongue dorsum
9453
9527
+
Glu
TTC
[ENA]
¢þ
>WENV181129562
OEFX01043223
[OEFX] human metagenome; G_DNA_Tongue dorsum
372
298
-
Glu
TTC
[ENA]
¢þ
>WENV181176502
OEJR01008355
[OEJR] human metagenome; G_DNA_Saliva
936
1010
+
Glu
TTC
[ENA]
¢þ
>WENV181501983
OGGI01003180
[OGGI] metagenome; Human gut stool
314
240
-
Glu
TTC
[ENA]
¢þ
>WENV181581621
OGKA01027346
[OGKA] metagenome; Human gut stool
1112
1038
-
Glu
TTC
[ENA]
¢þ
>WENV181582517
OGKB01011886
[OGKB] metagenome; Human gut stool
403
329
-
Glu
TTC
[ENA]
¢þ
>W141157960
AXNX01000003
Fusobacteriota
Fusobacterium nucleatum CTI-3 [AXNX]
71280
71206
-
Glu
TTC
[ENA]
¡û
>W141158058
AXNZ01000005
Fusobacteriota
Fusobacterium nucleatum CTI-1 [AXNZ]
127446
127372
-
Glu
TTC
[ENA]
¡û
>W141168147
AXUR01000024
Fusobacteriota
Fusobacterium nucleatum W1481 [AXUR]
24229
24303
+
Glu
TTC
[ENA]
¡û
>WENV181925738
OGYM01007311
[OGYM] human gut metagenome; faeces
4698
4772
+
Glu
TTC
[ENA]
¢þ
>WENV181980511
OHAF01042798
[OHAF] human gut metagenome; faeces
935
1009
+
Glu
TTC
[ENA]
¢þ
>WENV182521764
OIWQ01038853
[OIWQ] human gut metagenome; faeces
787
861
+
Glu
TTC
[ENA]
¢þ
>WENV182858312
OKOC01006701
[OKOC] human gut metagenome; human gut
542
616
+
Glu
TTC
[ENA]
¢þ
>WENV182864388
OKQC01001649
[OKQC] human gut metagenome; human gut
595
669
+
Glu
TTC
[ENA]
¢þ
>WENV183025154
OLFT01004900
[OLFT] human gut metagenome; faeces
7789
7863
+
Glu
TTC
[ENA]
¢þ
>WENV183225471
OLQN01097694
[OLQN] human gut metagenome; faeces
282
356
+
Glu
TTC
[ENA]
¢þ
>WENV183491415
OMGG01007560
[OMGG] human gut metagenome; human gut
1167
1241
+
Glu
TTC
[ENA]
¢þ
>C181058908
CP022124
Fusobacteriota
Fusobacterium animalis ChDC F332 [CP022124]
470119
470045
-
Glu
TTC
-
¡û
>C181104029
CP024699
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1261 [CP024699]
1414214
1414140
-
Glu
TTC
-
¡û
>C181104093
CP024700
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1263 [CP024700]
65029
64955
-
Glu
TTC
-
¡û
>C181104120
CP024701
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1277 [CP024701]
2058403
2058329
-
Glu
TTC
-
¡û
>C181104166
CP024702
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1282 [CP024702]
2012008
2012082
+
Glu
TTC
-
¡û
>C181104276
CP024704
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2555 [CP024704]
78292
78218
-
Glu
TTC
-
¡û
>C181104290
CP024705
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2653 [CP024705]
1375122
1375196
+
Glu
TTC
-
¡û
>C181104853
CP024731
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1262 [CP024731]
2287327
2287401
+
Glu
TTC
-
¡û
>C181161231
CP028108
Fusobacteriota
Fusobacterium periodonticum 2_1_31 [CP028108]
1823392
1823318
-
Glu
TTC
-
¡û
>W09118572
ACDC01000157
Fusobacteriota
Fusobacterium periodonticum 2_1_31 [ACDC]
5562
5636
+
Glu
TTC
[ENA]
¡û
>W09118694
ACDF01000049
Fusobacteriota
Fusobacterium animalis 7_1 [ACDF]
30857
30931
+
Glu
TTC
[ENA]
¡û
>W09119342
ACDS01000212
Fusobacteriota
Fusobacterium animalis D11 [ACDS]
18738
18812
+
Glu
TTC
[ENA]
¡û
>W09126681
ACJY01000081
Fusobacteriota
Fusobacterium periodonticum ATCC 33693 [ACJY]
737
663
-
Glu
TTC
[ENA]
¡û
>W1910942321
NJGJ01000001
Fusobacteriota
Fusobacterium animalis [NJGJ]
70254
70328
+
Glu
TTC
[ENA]
¡û
>W1911160088
NPNC01000130
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_LM [NPNC]
568
642
+
Glu
TTC
[ENA]
¡û
>W1911160099
NPND01000006
Fusobacteriota
Fusobacterium animalis subsp. animalis P2_CP [NPND]
72655
72729
+
Glu
TTC
[ENA]
¡û
>W1911596370
PNHC01000011
Fusobacteriota
Fusobacterium nucleatum UMB0249 [PNHC]
22651
22577
-
Glu
TTC
[ENA]
¡û
>C151016799
CP007062
Fusobacteriota
Fusobacterium animalis 7_1 [CP007062]
2347894
2347820
-
Glu
TTC
[Ensembl]
¡û
>W10103290
ACQE01000151
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
7049
7123
+
Glu
TTC
[ENA]
¡û
>W10113573
ADGG01000004
Fusobacteriota
Fusobacterium periodonticum 1_1_41FAA [ADGG]
41093
41019
-
Glu
TTC
[ENA]
¡û
>W10113587
ADGG01000051
Fusobacteriota
Fusobacterium periodonticum 1_1_41FAA [ADGG]
52765
52839
+
Glu
TTC
[ENA]
¡û
>W11103446
ACQE01000151
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
7049
7123
+
Glu
TTC
[ENA]
¡û
>W11106162
ACUO01000048
Fusobacteriota
Fusobacterium animalis 11_3_2 [ACUO]
21772
21698
-
Glu
TTC
[ENA]
¡û
>W11115175
ADEE01000012
Fusobacteriota
Fusobacterium animalis 21_1A [ADEE]
8127
8201
+
Glu
TTC
[ENA]
¡û
>W11116862
ADGG01000004
Fusobacteriota
Fusobacterium periodonticum 1_1_41FAA [ADGG]
41093
41019
-
Glu
TTC
[ENA]
¡û
>W11116876
ADGG01000051
Fusobacteriota
Fusobacterium periodonticum 1_1_41FAA [ADGG]
52765
52839
+
Glu
TTC
[ENA]
¡û
>W11171121
AFQD01000170
Fusobacteriota
Fusobacterium animalis subsp. animalis ATCC 51191 [AFQD]
4501
4427
-
Glu
TTC
[ENA]
¡û
>W121076734
AKBT01000001
Fusobacteriota
Fusobacterium animalis 7_1 [AKBT]
2161992
2161918
-
Glu
TTC
[ENA]
¡û
>W121077375
AKCE01000001
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AKCE]
817474
817548
+
Glu
TTC
[ENA]
¡û
>C131005497
CP003723
Fusobacteriota
Fusobacterium animalis 4_8 [CP003723]
159511
159585
+
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK