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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403738 (24 seq.)
>A171000854
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
576799
576873
+
Cys
GCA
-
¡û
>A171001265
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1460905
1460979
+
Cys
GCA
-
¡û
>A171001505
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
332989
332915
-
Cys
GCA
-
¡û
>A171004476
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1193873
1193947
+
Cys
GCA
-
¡û
>WENV180287904
OBIL01012293
[OBIL] metagenome; hydrothermal vent
706
632
-
Cys
GCA
[ENA]
¢þ
>WENV180332477
OBLD01018071
[OBLD] metagenome; water
307
381
+
Cys
GCA
[ENA]
¢þ
>WENV181206782
OFAW01006366
[OFAW] metagenome; hydrothermal vent
67
141
+
Cys
GCA
[ENA]
¢þ
>WENV181207622
OFAZ01008115
[OFAZ] metagenome; hydrothermal vent
26
100
+
Cys
GCA
[ENA]
¢þ
>WENV181207992
OFBA01006280
[OFBA] metagenome; hydrothermal vent
243
169
-
Cys
GCA
[ENA]
¢þ
>WENV181208341
OFBB01004475
[OFBB] metagenome; hydrothermal vent
528
602
+
Cys
GCA
[ENA]
¢þ
>WENV181212883
OFBU01000737
[OFBU] metagenome; hydrothermal vent
2085
2159
+
Cys
GCA
[ENA]
¢þ
>WENV181213410
OFBV01001708
[OFBV] metagenome; hydrothermal vent
610
536
-
Cys
GCA
[ENA]
¢þ
>WENV181213891
OFBW01001742
[OFBW] metagenome; hydrothermal vent
1763
1837
+
Cys
GCA
[ENA]
¢þ
>WENV181215182
OFBZ01006960
[OFBZ] metagenome; hydrothermal vent
1013
1087
+
Cys
GCA
[ENA]
¢þ
>WENV181215466
OFCA01000531
[OFCA] metagenome; hydrothermal vent
5092
5018
-
Cys
GCA
[ENA]
¢þ
>WENV181215963
OFCB01000563
[OFCB] metagenome; hydrothermal vent
2144
2218
+
Cys
GCA
[ENA]
¢þ
>WENV181225446
OFDI01001807
[OFDI] metagenome; hydrothermal vent
1686
1612
-
Cys
GCA
[ENA]
¢þ
>At0953
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
619234
619160
-
Cys
GCA
[Ensembl]
¡û
>W1610001117
ACQW01000007
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
38640
38714
+
Cys
GCA
[ENA]
¡û
>W1610001133
ACQY01000002
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
41212
41138
-
Cys
GCA
[ENA]
¡û
>W1610001531
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
140740
140814
+
Cys
GCA
[ENA]
¡û
>W1610001649
ADCA01000007
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
53871
53797
-
Cys
GCA
[ENA]
¡û
>W1610004291
AGJL01000019
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
699
770
+
Cys
GCA
[ENA]
¡û
>W1610018651
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
653691
653617
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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