This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.403773 (72 seq.)
>W1710862576
LMEM01000010
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
138461
138535
+
Gly
GCC
[ENA]
¡û
>W1710865833
LMGZ01000012
Alphaproteobacteria
Devosia sp. Root635 [LMGZ]
170792
170866
+
Gly
GCC
[ENA]
¡û
>W1711135149
LUYP01000027
Alphaproteobacteria
Rhizobiales bacterium Alpha_03 [LUYP]
67015
66941
-
Gly
GCC
[ENA]
¡û
>W131229803
AUHB01000004
Alphaproteobacteria
Pleomorphomonas oryzae DSM 16300 [AUHB]
373455
373529
+
Gly
GCC
[ENA]
¡û
>W1711385467
MEEG01000069
Alphaproteobacteria
Methylobacterium sp. SCN 67-24 [MEEG]
21550
21476
-
Gly
GCC
[ENA]
¡û
>W1711385939
MEEU01000024
Alphaproteobacteria
Pelagibacterium sp. SCN 63-23 [MEEU]
109119
109045
-
Gly
GCC
[ENA]
¡û
>W1711386020
MEEV01000027
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
8128
8202
+
Gly
GCC
[ENA]
¡û
>W1711386030
MEEV01000030
Alphaproteobacteria
Pelagibacterium sp. SCN 64-44 [MEEV]
40689
40615
-
Gly
GCC
[ENA]
¡û
>W1711387069
MEGG01000005
Alphaproteobacteria
Pelagibacterium sp. SCN 63-17 [MEGG]
66758
66832
+
Gly
GCC
[ENA]
¡û
>W1711504859
MKUY01000005
Alphaproteobacteria
Devosia sp. 63-57 [MKUY]
928013
927939
-
Gly
GCC
[ENA]
¡û
>WENV180039172
LLBY010032391
[LLBY] soil metagenome; soil from tomato rhizosphere
1706
1632
-
Gly
GCC
[ENA]
¡û
>WENV183728298
PJTQ01000011
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
221003
221077
+
Gly
GCC
[ENA]
¡û
>WENV183732485
PJTX01000967
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
4282
4356
+
Gly
GCC
[ENA]
¡û
>WENV183734134
PJTZ01000075
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
89091
89017
-
Gly
GCC
[ENA]
¡û
>WENV183736901
PJUD01000089
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
8573
8499
-
Gly
GCC
[ENA]
¡û
>WENV183737245
PJUD01001781
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
394
320
-
Gly
GCC
[ENA]
¡û
>WENV183739716
PJUF01000002
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
546002
546076
+
Gly
GCC
[ENA]
¡û
>WENV183740334
PJUF01001224
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
13217
13291
+
Gly
GCC
[ENA]
¡û
>WENV183741699
PJUG01001519
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
1243
1169
-
Gly
GCC
[ENA]
¡û
>WENV183743662
PJUJ01015983
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
78
4
-
Gly
GCC
[ENA]
¡û
>WENV170958483
MKWU01001156
[MKWU] sponge metagenome;
4046
3972
-
Gly
GCC
[ENA]
¡û
>WENV170959206
MKWU01003651
[MKWU] sponge metagenome;
10172
10098
-
Gly
GCC
[ENA]
¡û
>C191130664
CP034767
Alphaproteobacteria
Devosia sp. 1566 [CP034767]
4143183
4143109
-
Gly
GCC
-
¡û
>W141814301
JQGB01000009
Alphaproteobacteria
Devosia sp. 17-2-E-8 [JQGB]
40287
40213
-
Gly
GCC
[ENA]
¡û
>W1911189474
NQVN01000010
Alphaproteobacteria
Pleomorphomonas sp. SVCO-16 [NQVN]
3193
3119
-
Gly
GCC
[ENA]
¡û
>W1810173885
PJNW01000014
Alphaproteobacteria
Pleomorphomonas diazotrophica R5-392 [PJNW]
2839
2765
-
Gly
GCC
[ENA]
¡û
>W1810426192
PYVZ01000001
Alphaproteobacteria
Devosia indica IO390501 [PYVZ]
373480
373554
+
Gly
GCC
[ENA]
¡û
>C151079178
CP011300
Alphaproteobacteria
Devosia sp. H5989 [CP011300]
3563167
3563093
-
Gly
GCC
[Ensembl]
¡û
>W2010534018
JAAOYR010000006
Alphaproteobacteria
Pleomorphomonas sp. SG524 [JAAOYR]
3626
3552
-
Gly
GCC
[ENA]
¡û
>W2010534114
JAAOYT010000006
Alphaproteobacteria
Pleomorphomonas sp. SG806 [JAAOYT]
3626
3552
-
Gly
GCC
[ENA]
¡û
>W2010586345
JABAOL010000001
Alphaproteobacteria
Devosia sp. 919 [JABAOL]
375507
375433
-
Gly
GCC
[ENA]
¡û
>W2010586388
JABAOM010000003
Alphaproteobacteria
Devosia sp. 1635 [JABAOM]
557093
557019
-
Gly
GCC
[ENA]
¡û
>W2010726319
JACIEW010000004
Alphaproteobacteria
Devosia subaequoris DSM 23447 [JACIEW]
110704
110778
+
Gly
GCC
[ENA]
¡û
>W2011044953
NQVN01000010
Alphaproteobacteria
Pleomorphomonas sp. SVCO-16 [NQVN]
3193
3119
-
Gly
GCC
[ENA]
¡û
>W2011658495
SOEA01000006
Alphaproteobacteria
Pleomorphomonas sp. CF100 [SOEA]
299466
299540
+
Gly
GCC
[ENA]
¡û
>W2011785611
UCAU01000027
Alphaproteobacteria
Rhizobiales bacterium [UCAU]
6284
6210
-
Gly
GCC
[ENA]
¡û
>W2110022715
BMFM01000001
Alphaproteobacteria
Youhaiella tibetensis CGMCC 1.12719 [BMFM]
3611295
3611369
+
Gly
GCC
[ENA]
¡û
>W2110202932
JACDXV010000003
Alphaproteobacteria
Devosia sp. CC-YST696 [JACDXV]
46662
46736
+
Gly
GCC
[ENA]
¡û
>W2110427775
JAEMEB010000005
Alphaproteobacteria
Devosia sp. MC521 [JAEMEB]
117427
117353
-
Gly
GCC
[ENA]
¡û
>W2110427776
JAEMEB010000005
Alphaproteobacteria
Devosia sp. MC521 [JAEMEB]
117279
117205
-
Gly
GCC
[ENA]
¡û
>W2110428951
JAEMNZ010000003
Alphaproteobacteria
Devosia sp. MC532 [JAEMNZ]
202014
201940
-
Gly
GCC
[ENA]
¡û
>W2110428952
JAEMNZ010000003
Alphaproteobacteria
Devosia sp. MC532 [JAEMNZ]
201866
201792
-
Gly
GCC
[ENA]
¡û
>W2110431674
JAENGO010000005
Alphaproteobacteria
Devosia sp. WQ 349K1 [JAENGO]
222392
222318
-
Gly
GCC
[ENA]
¡û
>W2110431675
JAENGO010000005
Alphaproteobacteria
Devosia sp. WQ 349K1 [JAENGO]
222244
222170
-
Gly
GCC
[ENA]
¡û
>W2110581094
JAGXTP010000004
Alphaproteobacteria
Devosia sp. BSSL-BM10 [JAGXTP]
46840
46766
-
Gly
GCC
[ENA]
¡û
>C201169780
CP045919
Alphaproteobacteria
Devosia sp. D6-9 [CP045919]
165725
165799
+
Gly
GCC
-
¡û
>C211063131
CP045422
Alphaproteobacteria
Devosia sp. S02 [CP045422]
1716922
1716996
+
Gly
GCC
-
¡û
>C211381451
CP080590
Alphaproteobacteria
Devosia sp. SCS-3 [CP080590]
4262287
4262213
-
Gly
GCC
-
¡û
>C231097009
CP063401
Alphaproteobacteria
Devosia sp. SL43 [CP063401]
2756988
2756914
-
Gly
GCC
-
¡û
>C231483149
CP104002
Alphaproteobacteria
Devosia sp. SD17-2 [CP104002]
94885
94959
+
Gly
GCC
-
¡û
>C231483343
CP104007
Alphaproteobacteria
Devosia sp. FJ2-5-3 [CP104007]
96616
96690
+
Gly
GCC
-
¡û
>C231501086
CP104965
Alphaproteobacteria
Devosia neptuniae A18/4-1 [CP104965]
1157373
1157299
-
Gly
GCC
-
¡û
>C231501209
CP104974
Alphaproteobacteria
Devosia sp. A8/3-2 [CP104974]
465090
465016
-
Gly
GCC
-
¡û
>C231619877
CP119312
Alphaproteobacteria
Devosia sp. [CP119312]
3613339
3613413
+
Gly
GCC
-
¡û
>C241059302
CP041690
Alphaproteobacteria
Youhaiella tibetensis fig4 [CP041690]
4266542
4266468
-
Gly
GCC
-
¡û
>C241064545
CP042304
Alphaproteobacteria
Devosia ginsengisoli Gsoil 520 [CP042304]
3636417
3636343
-
Gly
GCC
-
¡û
>C241180040
CP059902
Alphaproteobacteria
Devosia sp. MC521 [CP059902]
3751598
3751524
-
Gly
GCC
-
¡û
>C241180041
CP059902
Alphaproteobacteria
Devosia sp. MC521 [CP059902]
3751450
3751376
-
Gly
GCC
-
¡û
>C241276346
CP127251
Alphaproteobacteria
Devosia sp. YIM 151766 [CP127251]
3257662
3257588
-
Gly
GCC
-
¡û
>W1511541994
JZEY01000061
Alphaproteobacteria
Devosia chinhatensis IPL18 [JZEY]
1000654
1000580
-
Gly
GCC
[ENA]
¡û
>W1511568573
LAJE01000072
Alphaproteobacteria
Devosia insulae DS-56 [LAJE]
788153
788079
-
Gly
GCC
[ENA]
¡û
>W1511568627
LAJF01000106
Alphaproteobacteria
Devosia limi DSM 17137 [LAJF]
7304
7230
-
Gly
GCC
[ENA]
¡û
>W1511568659
LAJG01000021
Alphaproteobacteria
Devosia soli GH2-10 [LAJG]
51128
51202
+
Gly
GCC
[ENA]
¡û
>W1511573962
LANJ01000016
Alphaproteobacteria
Devosia epidermidihirudinis E84 [LANJ]
158428
158502
+
Gly
GCC
[ENA]
¡û
>W1511574012
LANK01000028
Alphaproteobacteria
Devosia subaequoris HST3-14 [LANK]
52774
52848
+
Gly
GCC
[ENA]
¡û
>W1610724922
LMEM01000010
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
138461
138535
+
Gly
GCC
[ENA]
¡û
>W1610728179
LMGZ01000012
Alphaproteobacteria
Devosia sp. Root635 [LMGZ]
170792
170866
+
Gly
GCC
[ENA]
¡û
>W1610946269
LUYP01000027
Alphaproteobacteria
Rhizobiales bacterium Alpha_03 [LUYP]
67015
66941
-
Gly
GCC
[ENA]
¡û
>WENV077283
AAFX01016129
Soil microbial communities from Minnesota Farm
957
883
-
Gly
GCC
[ENA]
>W1710579506
FPCK01000003
Alphaproteobacteria
Devosia crocina [FPCK]
561862
561936
+
Gly
GCC
[ENA]
¡û
>W1710582179
FPKU01000002
Alphaproteobacteria
Devosia enhydra [FPKU]
546347
546421
+
Gly
GCC
[ENA]
¡û
>W1710609413
FXWK01000002
Alphaproteobacteria
Devosia lucknowensis [FXWK]
575716
575642
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK