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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404374 (27 seq.)
>W1710864886
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
1448374
1448448
+
Met
CAT
[ENA]
¡û
>W1711386368
MEFG01000019
Alphaproteobacteria
Sphingomonas sp. SCN 67-18 [MEFG]
7267
7193
-
Met
CAT
[ENA]
¡û
>WENV180690802
OCZS010025853
[OCZS] soil metagenome; soil
1661
1587
-
Ile2
CAT
[ENA]
¡û
>ENV08000191
ABLY01006142
viral fraction from Arctic Ocean
106
32
-
Met
CAT
[ENA]
¡û
>ENV08000194
ABLY01008725
viral fraction from Arctic Ocean
90
16
-
Met
CAT
[ENA]
¡û
>ENV08000196
ABLY01009661
viral fraction from Arctic Ocean
34
108
+
Met
CAT
[ENA]
¡û
>ENV08000197
ABLY01010577
viral fraction from Arctic Ocean
84
10
-
Met
CAT
[ENA]
¡û
>WENV170991697
MWWA01290237
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
275
349
+
Met
CAT
[ENA]
¡û
>W1910744341
MIAL01000016
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
278354
278428
+
Met
CAT
[ENA]
¡û
>SRA1000188
SRR001036.300629
Marine Viruses from Arctic Ocean (SRP000129)
84
10
-
Met
CAT
[SRA]
>W1810608994
QGTR01000006
Alphaproteobacteria
Hoeflea marina DSM 16791 [QGTR]
218560
218634
+
Met
CAT
[ENA]
¡û
>W2010370221
CAHJWP010000045
Alphaproteobacteria
Sphingomonadaceae bacterium [CAHJWP]
10790
10863
+
Ile2
CAT
[ENA]
¡û
>W2010711943
JACHNZ010000019
Alphaproteobacteria
Sphingosinicella soli DSM 17328 [JACHNZ]
64844
64918
+
Ile2
CAT
[ENA]
¡û
>W2010713035
JACHOV010000010
Alphaproteobacteria
Rhizorhapis suberifaciens DSM 7465 [JACHOV]
372
298
-
Ile2
CAT
[ENA]
¡û
>W2010731511
JACIJC010000005
Alphaproteobacteria
Sphingobium boeckii DSM 25079 [JACIJC]
370650
370724
+
Ile2
CAT
[ENA]
¡û
>W2010877773
MIAL01000016
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
278354
278428
+
Ile2
CAT
[ENA]
¡û
>W2011588613
SIHO01000001
Alphaproteobacteria
Polymorphobacter sp. DJ1R-1 [SIHO]
1173976
1173902
-
Ile2
CAT
[ENA]
¡û
>W2110027815
BMJM01000001
Alphaproteobacteria
Polymorphobacter glacialis CGMCC 1.15519 [BMJM]
380256
380329
+
Ile2
CAT
[ENA]
¡û
>W2110570397
JAGSPA010000003
Alphaproteobacteria
Pacificimonas sp. WHA3 [JAGSPA]
30417
30343
-
Ile2
CAT
[ENA]
¡û
>W2110689684
JAINVV010000001
Alphaproteobacteria
Sphingomonas colocasiae JCM 31229 [JAINVV]
69503
69429
-
Ile2
CAT
[ENA]
¡û
>C211136833
CP060697
Alphaproteobacteria
Sphingomonas sp. sand1-3 [CP060697]
860904
860978
+
Ile2
CAT
-
¡û
>C211137989
CP060725
Alphaproteobacteria
Sphingopyxis sp. OPL5 [CP060725]
3807201
3807275
+
Ile2
CAT
-
¡û
>C211376209
CP080327
Alphaproteobacteria
Aquisediminimonas profunda DS48-3 [CP080327]
2533606
2533680
+
Ile2
CAT
-
¡û
>C241138350
CP049871
Alphaproteobacteria
Sphingomonas sinipercae HDW15C [CP049871]
1143797
1143723
-
Ile2
CAT
-
¡û
>C241148299
CP051130
Alphaproteobacteria
Parasphingopyxis sp. CP4 [CP051130]
955968
955894
-
Ile2
CAT
-
¡û
>W1610727232
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
1448374
1448448
+
Met
CAT
[ENA]
¡û
>WENV077792
AAFX01108289
Soil microbial communities from Minnesota Farm
433
507
+
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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