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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404653 (41 seq.)
>W131166468
ARCM01000003
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
1193838
1193764
-
Val
CAC
[ENA]
¡û
>W131175675
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
2292063
2292137
+
Val
CAC
[ENA]
¡û
>w015417
AAPC01000010
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
45329
45403
+
Val
CAC
[ENA]
¡û
>WENV180021795
FTFB01009717
[FTFB] metagenome; soil
5304
5378
+
Val
CAC
[ENA]
¡û
>WENV180021796
FTFB01009724
[FTFB] metagenome; soil
3561
3635
+
Val
CAC
[ENA]
¡û
>WENV180034343
FTKQ01000055
[FTKQ] metagenome; soil
7748
7674
-
Val
CAC
[ENA]
¡û
>WENV180034382
FTKQ01008154
[FTKQ] metagenome; soil
199
273
+
Val
CAC
[ENA]
¡û
>WENV180034436
FTKQ01108165
[FTKQ] metagenome; soil
180
254
+
Val
CAC
[ENA]
¡û
>WENV180351461
OBLQ010059001
[OBLQ] soil metagenome; soil
575
649
+
Val
CAC
[ENA]
¡û
>WENV180351526
OBLQ010067245
[OBLQ] soil metagenome; soil
347
273
-
Val
CAC
[ENA]
¡û
>WENV181167889
OEIU01096469
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
472
546
+
Val
CAC
[ENA]
¡û
>WENV181171348
OEIV010205081
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
25
99
+
Val
CAC
[ENA]
¡û
>WENV181189785
OEOF01223421
[OEOF] activated sludge metagenome; Activated Sludge
11
85
+
Val
CAC
[ENA]
¡û
>WENV181307839
OFIS01000003
[OFIS] sludge metagenome; sludge
529860
529934
+
Val
CAC
[ENA]
¡û
>WENV181311362
OFJB01001129
[OFJB] sludge metagenome; sludge
6388
6462
+
Val
CAC
[ENA]
¡û
>WENV181402076
OFTY01000088
[OFTY] sludge metagenome; sludge
47433
47507
+
Val
CAC
[ENA]
¡û
>W141151379
AXBA01000015
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
169856
169782
-
Val
CAC
[ENA]
¡û
>C08011467
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
3566506
3566435
-
Val
CAC
[Ensembl]
¡û
>W141278511
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
1943140
1943066
-
Val
CAC
[ENA]
¡û
>WENV170551775
CXWJ01022638
[CXWJ] wastewater metagenome; activated sludge
1239
1313
+
Val
CAC
[ENA]
¡û
>W2010731195
JACIIW010000003
Alphaproteobacteria
Xanthobacter tagetidis DSM 11105 [JACIIW]
162332
162258
-
Val
CAC
[ENA]
¡û
>W2011402571
RCTF01000014
Alphaproteobacteria
Xanthobacter tagetidis ATCC 700314 [RCTF]
62771
62697
-
Val
CAC
[ENA]
¡û
>W2011495198
RWKV01000008
Alphaproteobacteria
Aquabacter sp. Sn-9-2 [RWKV]
840227
840301
+
Val
CAC
[ENA]
¡û
>W2011496745
RXIO01000048
Alphaproteobacteria
Ancylobacter aquaticus UV5 [RXIO]
34870
34796
-
Val
CAC
[ENA]
¡û
>W2011627335
SMAI01000012
Alphaproteobacteria
Aquabacter spiritensis DSM 9035 [SMAI]
89328
89254
-
Val
CAC
[ENA]
¡û
>W2011633843
SMFY01000001
Alphaproteobacteria
Ancylobacter aquaticus DSM 101 [SMFY]
1695890
1695816
-
Val
CAC
[ENA]
¡û
>W2011654981
SOBM01000002
Alphaproteobacteria
Azorhizobium sp. AG788 [SOBM]
441610
441684
+
Val
CAC
[ENA]
¡û
>W2011963377
VAUP01000028
Alphaproteobacteria
Xanthobacter autotrophicus DSM 432 [VAUP]
194715
194641
-
Val
CAC
[ENA]
¡û
>W2012088627
VMBP01000002
Alphaproteobacteria
Starkeya sp. 3C [VMBP]
500993
500919
-
Val
CAC
[ENA]
¡û
>W2012144457
VTTL01000002
Alphaproteobacteria
Xanthobacter sp. 29k [VTTL]
177631
177705
+
Val
CAC
[ENA]
¡û
>W2110590305
JAHBGC010000009
Alphaproteobacteria
Ancylobacter dichloromethanicus VKM B-2484 [JAHBGC]
36477
36403
-
Val
CAC
[ENA]
¡û
>W2110590437
JAHBGE010000083
Alphaproteobacteria
Ancylobacter lacus VKM B-3280 [JAHBGE]
32731
32657
-
Val
CAC
[ENA]
¡û
>W2110593091
JAHCQH010000017
Alphaproteobacteria
Ancylobacter sp. VKM B-3255 [JAHCQH]
370662
370736
+
Val
CAC
[ENA]
¡û
>C201154108
CP045144
Alphaproteobacteria
Ancylobacter sp. TS-1 [CP045144]
255731
255657
-
Val
CAC
-
¡û
>C211176150
CP063362
Alphaproteobacteria
Xanthobacter sp. YN2 [CP063362]
3710045
3709971
-
Val
CAC
-
¡û
>C231179891
CP083239
Alphaproteobacteria
Ancylobacter polymorphus ZM13 [CP083239]
4082805
4082879
+
Val
CAC
-
¡û
>C241088248
CP044331
Alphaproteobacteria
Methylocystis parvus BRCS2 [CP044331]
2175702
2175776
+
Val
CAC
-
¡û
>C241131978
CP048834
Alphaproteobacteria
Starkeya sp. ORNL1 [CP048834]
1717694
1717768
+
Val
CAC
-
¡û
>C241374005
CP143314
Alphaproteobacteria
Methylocystis iwaonis SD4 [CP143314]
3059846
3059772
-
Val
CAC
-
¡û
>W2310021151
BSDO01000006
Alphaproteobacteria
Xanthobacter flavus 301 [BSDO]
224242
224168
-
Val
CAC
[ENA]
¡û
>W1710505312
FMTP01000004
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
408085
408011
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK