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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.404675 (73 seq.)
>W1711666766
MRCG01000010
Cyanobacteriota
Phormidium tenue NIES-30 [MRCG]
58298
58369
+
Thr
GGT
[ENA]
¡û
>W1711792874
MWLD01000033
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum LMB bulk15M [MWLD]
7844
7773
-
Thr
GGT
[ENA]
¡û
>W1711792894
MWLD01000071
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum LMB bulk15M [MWLD]
658
729
+
Thr
GGT
[ENA]
¡û
>W1711792924
MWLE01000071
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum LMB bulk15N [MWLE]
5859
5930
+
Thr
GGT
[ENA]
¡û
>C171128291
LT578417
Cyanobacteriota
Cyanobium sp. NIES-981 [LT578417]
1554269
1554341
+
Thr
GGT
-
¡û
>W131036416
ALVP01000013
Cyanobacteriota
Nodosilinea nodulosa PCC 7104 [ALVP]
148828
148757
-
Thr
GGT
[ENA]
¡û
>C021118
AP008231
Cyanobacteriota
Synechococcus elongatus PCC 6301 [AP008231]
697564
697490
-
Thr
GGT
[Ensembl]
¡û
>C021134
CP000100
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [CP000100]
923243
923317
+
Thr
GGT
[Ensembl]
¡û
>w019212
AAUA01000003
Cyanobacteriota
Synechococcus sp. RS9916 [AAUA]
17498
17424
-
Thr
GGT
[ENA]
¡û
>w013634
AANP01000007
Cyanobacteriota
Synechococcus sp. RS9917 [AANP]
178448
178522
+
Thr
GGT
[ENA]
¡û
>w013593
AANO01000009
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
14587
14513
-
Thr
GGT
[ENA]
¡û
>WENV180114192
OAPS01000312
[OAPS] marine metagenome; sea water
918
847
-
Thr
GGT
[ENA]
¢þ
>WENV180360039
OBNT01001077
[OBNT] marine metagenome; Sea Water
739
810
+
Thr
GGT
[ENA]
¢þ
>WENV180365663
OBOC01009435
[OBOC] marine metagenome; ocean water
438
509
+
Thr
GGT
[ENA]
¢þ
>WENV180591344
OCOV01013434
[OCOV] marine metagenome; ENVO:01000301
240
169
-
Thr
GGT
[ENA]
¢þ
>WENV180635302
OCRD01006592
[OCRD] marine metagenome; seawater
345
416
+
Thr
GGT
[ENA]
¢þ
>WENV180641455
OCRN01003716
[OCRN] marine metagenome; ENVO:00002010, 'SEA WATER
801
730
-
Thr
GGT
[ENA]
¢þ
>WENV180690014
OCZB010435191
[OCZB] metagenome; Oyster Gut Contents
91
20
-
Thr
GGT
[ENA]
¢þ
>W08011033
ABSE01000012
Cyanobacteriota
Cyanobium sp. PCC 7001 [ABSE]
30861
30933
+
Thr
GGT
[ENA]
¡û
>WENV019487
AACY020533220
Marine microbial communities from Global Ocean Sampling (GOS)
1387
1313
-
Thr
GGT
[ENA]
>WENV183748393
PPFU01034827
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1376
1447
+
Thr
GGT
[ENA]
¢þ
>WENV170301645
CESH01055013
[CESH] marine metagenome genome assembly TARA_094_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3212
3141
-
Thr
GGT
[ENA]
¢þ
>W141426875
JENA01000077
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum SH4 [JENA]
4515
4444
-
Thr
GGT
[ENA]
¡û
>W141426882
JENA01000092
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum SH4 [JENA]
1607
1678
+
Thr
GGT
[ENA]
¡û
>WENV170768039
LXNH01010756
[LXNH] seawater metagenome; marine seawater
3034
2963
-
Thr
GGT
[ENA]
¢þ
>WENV170802912
MDSW01021139
[MDSW] marine metagenome; seawater
41
115
+
Thr
GGT
[ENA]
¢þ
>WENV170804338
MDSW01045713
[MDSW] marine metagenome; seawater
3841
3770
-
Thr
GGT
[ENA]
¢þ
>WENV170806368
MDSW01080828
[MDSW] marine metagenome; seawater
27
98
+
Thr
GGT
[ENA]
¢þ
>WENV170810456
MDSW01149112
[MDSW] marine metagenome; seawater
7901
7830
-
Thr
GGT
[ENA]
¢þ
>WENV170812111
MDSW01177901
[MDSW] marine metagenome; seawater
2812
2738
-
Thr
GGT
[ENA]
¢þ
>WENV170814274
MDSW01213956
[MDSW] marine metagenome; seawater
14785
14711
-
Thr
GGT
[ENA]
¢þ
>WENV170814689
MDSW01221357
[MDSW] marine metagenome; seawater
7
78
+
Thr
GGT
[ENA]
¢þ
>WENV170831913
MDSZ01052681
[MDSZ] marine metagenome; seawater
5022
5096
+
Thr
GGT
[ENA]
¢þ
>WENV170855451
MDTA01205794
[MDTA] marine metagenome; seawater
3399
3328
-
Thr
GGT
[ENA]
¢þ
>WENV170857185
MDTB01005415
[MDTB] marine metagenome; seawater
83
154
+
Thr
GGT
[ENA]
¢þ
>WENV170959696
MKWU01007080
[MKWU] sponge metagenome;
632
703
+
Thr
GGT
[ENA]
¢þ
>WENV170960322
MKWU01023821
[MKWU] sponge metagenome;
3810
3739
-
Thr
GGT
[ENA]
¢þ
>W09101099
AADZ01000001
Cyanobacteriota
Synechococcus elongatus PCC 7942 [AADZ]
211866
211940
+
Thr
GGT
[ENA]
¡û
>WENV021846
AACY020601473
Marine microbial communities from Global Ocean Sampling (GOS)
262
188
-
Thr
GGT
[ENA]
>C191099590
CP033061
Cyanobacteriota
Synechococcus elongatus UTEX 3055 [CP033061]
197287
197215
-
Thr
GGT
-
¡û
>C191146981
CP035914
Cyanobacteriota
Synechococcus sp. WH 8101 [CP035914]
602701
602630
-
Thr
GGT
-
¡û
>C191165446
CP039373
Cyanobacteriota
Synechococcus sp. CB0101 [CP039373]
2099021
2098950
-
Thr
GGT
-
¡û
>W141712582
JMRP01000034
Cyanobacteriota
Cyanobium sp. CACIAM 14 [JMRP]
6706
6635
-
Thr
GGT
[ENA]
¡û
>W1911176880
NQKW01000010
Cyanobacteriota
Synechococcus sp. 1G10 [NQKW]
78728
78799
+
Thr
GGT
[ENA]
¡û
>W1911176903
NQKX01000001
Cyanobacteriota
Synechococcus sp. MW101C3 [NQKX]
57699
57628
-
Thr
GGT
[ENA]
¡û
>W1911177010
NQKZ01000018
Cyanobacteriota
Synechococcus sp. 8F6 [NQKZ]
26238
26309
+
Thr
GGT
[ENA]
¡û
>W1911177056
NQLA01000067
Cyanobacteriota
Vulcanococcus limneticus LL [NQLA]
9611
9540
-
Thr
GGT
[ENA]
¡û
>W1911582801
PHQT01000005
Cyanobacteriota
Synechococcus sp. BS55D [PHQT]
13791
13720
-
Thr
GGT
[ENA]
¡û
>W1911582832
PHQU01000005
Cyanobacteriota
Synechococcus sp. BS56D [PHQU]
17074
17003
-
Thr
GGT
[ENA]
¡û
>W1911638488
PVWP01000003
Cyanobacteriota
Aphanothece minutissima minutissima CCALA 015 [PVWP]
9663
9592
-
Thr
GGT
[ENA]
¡û
>SRA1005246
SRR006907.132354
metagenomic water samples (SRP000427)
162
91
-
Thr
GGT
[SRA]
>SRA1005320
SRR006907.175990
metagenomic water samples (SRP000427)
162
91
-
Thr
GGT
[SRA]
>W1810398656
PYER01000447
Cyanobacteriota
filamentous cyanobacterium CCT1 [PYER]
2674
2745
+
Thr
GGT
[ENA]
¡û
>W1810400263
PYFY01000485
Cyanobacteriota
filamentous cyanobacterium CCP4 [PYFY]
4310
4381
+
Thr
GGT
[ENA]
¡û
>W1810401296
PYGV01000171
Cyanobacteriota
filamentous cyanobacterium CCP3 [PYGV]
2578
2649
+
Thr
GGT
[ENA]
¡û
>W1810528190
QCSN01000032
Cyanobacteriota
Synechococcus sp. AG-670-F04 [QCSN]
15851
15922
+
Thr
GGT
[ENA]
¡û
>W1810528994
QCTW01000010
Cyanobacteriota
Synechococcus sp. AG-676-E04 [QCTW]
408
479
+
Thr
GGT
[ENA]
¡û
>C151009046
CP006269
Cyanobacteriota
Synechococcus sp. KORDI-100 [CP006269]
769335
769261
-
Thr
GGT
[Ensembl]
¡û
>C151009084
CP006270
Cyanobacteriota
Synechococcus sp. KORDI-49 [CP006270]
2105926
2105855
-
Thr
GGT
[Ensembl]
¡û
>C151009167
CP006471
Cyanobacteriota
Synechococcus elongatus UTEX 2973 [CP006471]
2341221
2341147
-
Thr
GGT
[Ensembl]
¡û
>WENV034944
AACY021656252
Marine microbial communities from Global Ocean Sampling (GOS)
740
814
+
Thr
GGT
[ENA]
>W10120550
ADXL01000082
Cyanobacteriota
Synechococcus sp. CB0101 [ADXL]
4913
4984
+
Thr
GGT
[ENA]
¡û
>W10120584
ADXM01000031
Cyanobacteriota
Synechococcus sp. CB0205 [ADXM]
12144
12073
-
Thr
GGT
[ENA]
¡û
>WENV039575
AACY022019798
Marine microbial communities from Global Ocean Sampling (GOS)
491
417
-
Thr
GGT
[ENA]
>W1511324010
JQFA01000002
Cyanobacteriota
Leptolyngbya sp. KIOST-1 [JQFA]
3714430
3714501
+
Thr
GGT
[ENA]
¡û
>WENV042074
AACY022209819
Marine microbial communities from Global Ocean Sampling (GOS)
472
546
+
Thr
GGT
[ENA]
>W11127294
ADXL01000082
Cyanobacteriota
Synechococcus sp. CB0101 [ADXL]
4913
4984
+
Thr
GGT
[ENA]
¡û
>W11127328
ADXM01000031
Cyanobacteriota
Synechococcus sp. CB0205 [ADXM]
12144
12073
-
Thr
GGT
[ENA]
¡û
>W1511508497
JXQG01000047
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum SP3 [JXQG]
5536
5465
-
Thr
GGT
[ENA]
¡û
>W1511524899
JYFQ01000222
Cyanobacteriota
Candidatus Synechococcus spongiarum spongiarum 15L [JYFQ]
152
223
+
Thr
GGT
[ENA]
¡û
>W1511679482
LFEK01000052
Cyanobacteriota
Synechococcus sp. GFB01 [LFEK]
18664
18593
-
Thr
GGT
[ENA]
¡û
>WENV051788
AACY022980991
Marine microbial communities from Global Ocean Sampling (GOS)
214
140
-
Thr
GGT
[ENA]
>C131003917
CP003495
Cyanobacteriota
Cyanobium gracile PCC 6307 [CP003495]
2919736
2919665
-
Thr
GGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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