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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.405538 (28 seq.)
>WENV180104080
OAPB01074333
[OAPB] marine metagenome; Sterile flask
3
77
+
Gln
TTG
[ENA]
¡û
>WENV180114960
OAPS01082088
[OAPS] marine metagenome; sea water
339
265
-
Gln
TTG
[ENA]
¡û
>WENV180212428
OBAN01036287
[OBAN] marine metagenome; ENVO 00002150
390
316
-
Gln
TTG
[ENA]
¡û
>WENV180273523
OBET01000739
[OBET] marine metagenome; marine
575
649
+
Gln
TTG
[ENA]
¡û
>WENV180378244
OBOO01015956
[OBOO] marine metagenome; ENVO 00002150
415
341
-
Gln
TTG
[ENA]
¡û
>WENV180594503
OCOZ01049350
[OCOZ] marine metagenome; vv
408
334
-
Gln
TTG
[ENA]
¡û
>WENV170134603
CENU01125096
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
250
176
-
Gln
TTG
[ENA]
¡û
>WENV170590068
FUFK010690583
[FUFK] metagenome; unknown
208
282
+
Gln
TTG
[ENA]
¡û
>WENV170837131
MDSZ01143898
[MDSZ] marine metagenome; seawater
3401
3327
-
Gln
TTG
[ENA]
¡û
>WENV170838324
MDSZ01165868
[MDSZ] marine metagenome; seawater
516
590
+
Gln
TTG
[ENA]
¡û
>WENV170864617
MDTB01108077
[MDTB] marine metagenome; seawater
745
819
+
Gln
TTG
[ENA]
¡û
>WENV170864692
MDTB01109067
[MDTB] marine metagenome; seawater
2804
2730
-
Gln
TTG
[ENA]
¡û
>WENV170878657
MDTC01080961
[MDTC] marine metagenome; seawater
1582
1508
-
Gln
TTG
[ENA]
¡û
>WENV170879089
MDTC01088926
[MDTC] marine metagenome; seawater
2840
2766
-
Gln
TTG
[ENA]
¡û
>WENV170891700
MDTD01027887
[MDTD] marine metagenome; seawater
3019
3093
+
Gln
TTG
[ENA]
¡û
>WENV170893142
MDTD01048398
[MDTD] marine metagenome; seawater
2628
2554
-
Gln
TTG
[ENA]
¡û
>WENV170923862
MDTG01056354
[MDTG] marine metagenome; seawater
7210
7281
+
Gln
TTG
[ENA]
¡û
>WENV170936430
MDTG01275151
[MDTG] marine metagenome; seawater
461
387
-
Gln
TTG
[ENA]
¡û
>C181068118
CP022540
Alphaproteobacteria
Antarctobacter heliothermus SMS3 [CP022540]
4661898
4661824
-
Gln
TTG
-
¡û
>W1910442751
FWFM01000002
Alphaproteobacteria
Marinovum algicola CECT 5396 [FWFM]
60717
60643
-
Gln
TTG
[ENA]
¡û
>W1810725027
QOCF01000014
Alphaproteobacteria
Ruegeria sp. A3M17 [QOCF]
222263
222189
-
Gln
TTG
[ENA]
¡û
>W2010406115
FWFM01000002
Alphaproteobacteria
Marinovum algicola CECT 5396 [FWFM]
60717
60643
-
Gln
TTG
[ENA]
¡û
>W2010430234
FZON01000088
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
11837
11911
+
Gln
TTG
[ENA]
¡û
>W2110661773
JAHXRW010000013
Alphaproteobacteria
Celeribacter sp. PS-C1 [JAHXRW]
60446
60520
+
Gln
TTG
[ENA]
¡û
>C231167792
CP080774
Alphaproteobacteria
Aliiroseovarius crassostreae S051 [CP080774]
688758
688832
+
Gln
TTG
-
¡û
>C231167890
CP080778
Alphaproteobacteria
Aliiroseovarius crassostreae S128 [CP080778]
693311
693385
+
Gln
TTG
-
¡û
>C231167939
CP080780
Alphaproteobacteria
Aliiroseovarius crassostreae S137 [CP080780]
715728
715802
+
Gln
TTG
-
¡û
>C231168018
CP080782
Alphaproteobacteria
Aliiroseovarius crassostreae S202 [CP080782]
1880450
1880376
-
Gln
TTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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