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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.407006 (32 seq.)
>W131156281
AQPN01000139
Bacteroidota
Arcticibacter svalbardensis MN12-7 [AQPN]
19148
19076
-
Thr
GGT
[ENA]
¡û
>W131229763
AUHA01000002
Bacteroidota
Daejeonella oryzae DSM 19973 [AUHA]
13369
13295
-
Thr
GGT
[ENA]
¡û
>W1711354795
MDFN01000030
Bacteroidota
Arcticibacter eurypsychrophilus [MDFN]
61805
61733
-
Thr
GGT
[ENA]
¡û
>W131234996
AULF01000009
Bacteroidota
Pedobacter glucosidilyticus DSM 23534 [AULF]
138702
138776
+
Thr
GGT
[ENA]
¡û
>WENV183729074
PJTQ01003932
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
2753
2825
+
Thr
GGT
[ENA]
¡û
>WENV183729272
PJTQ01016387
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
186
258
+
Thr
GGT
[ENA]
¡û
>WENV183737021
PJUD01000243
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
33935
33863
-
Thr
GGT
[ENA]
¡û
>WENV183738856
PJUE01000306
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
33935
33863
-
Thr
GGT
[ENA]
¡û
>WENV183740440
PJUF01002164
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1598
1526
-
Thr
GGT
[ENA]
¡û
>WENV170264008
CERC01133345
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3183
3111
-
Thr
GGT
[ENA]
¡û
>WENV170995640
MWWF01030772
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
595
667
+
Thr
GGT
[ENA]
¡û
>WENV170997388
MWWG01109888
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
175
247
+
Thr
GGT
[ENA]
¡û
>W1810296319
PTJF01000006
Bacteroidota
Parapedobacter indicus RK1 [PTJF]
247052
247124
+
Thr
GGT
[ENA]
¡û
>W1810564216
QEAS01000017
Bacteroidota
Pararcticibacter amylolyticus FJ4-8 [QEAS]
71934
71862
-
Thr
GGT
[ENA]
¡û
>W1810789232
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
1752683
1752755
+
Thr
GGT
[ENA]
¡û
>W2011531818
SBJH01000071
Bacteroidota
Olivibacter sp. XZL3 [SBJH]
42979
42907
-
Thr
GGT
[ENA]
¡û
>W2011701681
SWBP01000002
Bacteroidota
Pedobacter sp. AR-3-17 [SWBP]
337660
337732
+
Thr
GGT
[ENA]
¡û
>W2011951824
UWUA01000006
Bacteroidota
Olivibacter jilunii P8502 [UWUA]
104029
104101
+
Thr
GGT
[ENA]
¡û
>W2012021695
VFPL01000001
Bacteroidota
Pedobacter tournemirensis DSM 23085 [VFPL]
4810017
4809945
-
Thr
GGT
[ENA]
¡û
>W2012196189
VWNE01000018
Bacteroidota
Pedobacter tournemirensis TF5-37.2-LB10 [VWNE]
43802
43730
-
Thr
GGT
[ENA]
¡û
>W2012357208
WKJI01000001
Bacteroidota
Pedobacter sp. HX-22-1 [WKJI]
269529
269601
+
Thr
GGT
[ENA]
¡û
>W2012457873
WVHS01000006
Bacteroidota
Pedobacter sp. HMF7056 [WVHS]
180758
180686
-
Thr
GGT
[ENA]
¡û
>W2110431597
JAENGN010000001
Bacteroidota
Parapedobacter sp. ISTM3 [JAENGN]
430281
430353
+
Thr
GGT
[ENA]
¡û
>C201099359
CP041643
Bacteroidota
Olivibacter sp. LS-1 [CP041643]
2265592
2265664
+
Thr
GGT
-
¡û
>C211134533
CP060497
Bacteroidota
Olivibacter sp. SDN3 [CP060497]
3092881
3092953
+
Thr
GGT
-
¡û
>C241078380
CP043329
Bacteroidota
Pedobacter aquae CJ43 [CP043329]
316924
316996
+
Thr
GGT
-
¡û
>W1511206112
JMTN01000009
Bacteroidota
Pedobacter glucosidilyticus DD6b [JMTN]
11979
12053
+
Thr
GGT
[ENA]
¡û
>C11117934
CP002545
Bacteroidota
Pseudopedobacter saltans DSM 12145 [CP002545]
2643689
2643617
-
Thr
GGT
[Ensembl]
¡û
>C11121205
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
2965737
2965809
+
Thr
GGT
[Ensembl]
¡û
>W11140072
AEKX01000008
Bacteroidota
Pseudopedobacter saltans DSM 12145 [AEKX]
184411
184483
+
Thr
GGT
[ENA]
¡û
>W1710543112
FNZR01000001
Bacteroidota
Parapedobacter koreensis [FNZR]
704954
704882
-
Thr
GGT
[ENA]
¡û
>W1710603001
FUYS01000001
Bacteroidota
Parapedobacter luteus [FUYS]
232176
232248
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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