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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.407057 (15 seq.)
>C181163926
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
1390966
1391040
+
Ala
TGC
-
¡û
>W1911573349
PDEA01000001
Betaproteobacteria
Comamonas terrigena FDAARGOS_394 [PDEA]
409164
409090
-
Ala
TGC
[ENA]
¡û
>SRA1016037
SRR023846.319598
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
126
52
-
Ala
TGC
[SRA]
>W2010675386
JACCGA010000001
Betaproteobacteria
Comamonas sp. B9U6D [JACCGA]
6695
6769
+
Ala
TGC
[ENA]
¡û
>W2011183790
PDEA01000001
Betaproteobacteria
Comamonas terrigena FDAARGOS_394 [PDEA]
409164
409090
-
Ala
TGC
[ENA]
¡û
>W2012106185
VOPW01000001
Betaproteobacteria
Piscinibacter aquaticus KACC 15278 [VOPW]
3454327
3454253
-
Ala
TGC
[ENA]
¡û
>C201192511
CP046909
Betaproteobacteria
Paraburkholderia sp. 7Q-K02 [CP046909, CP046910, CP046911, CP046912]
1059504
1059578
+
Ala
TGC
-
¡û
>C201192550
CP046909
Betaproteobacteria
Paraburkholderia sp. 7Q-K02 [CP046909, CP046910, CP046911, CP046912]
2755291
2755217
-
Ala
TGC
-
¡û
>C201192572
CP046911
Betaproteobacteria
Paraburkholderia sp. 7Q-K02 [CP046909, CP046910, CP046911, CP046912]
776439
776513
+
Ala
TGC
-
¡û
>C211212902
CP065695
Betaproteobacteria
Delftia acidovorans FDAARGOS_891 [CP065695]
594669
594595
-
Ala
TGC
-
¡û
>C211406278
CP083938
Betaproteobacteria
Comamonas thiooxydans CSUSB4 [CP083938]
550567
550641
+
Ala
TGC
-
¡û
>C211406285
CP083938
Betaproteobacteria
Comamonas thiooxydans CSUSB4 [CP083938]
1399870
1399944
+
Ala
TGC
-
¡û
>C231454386
CP102486
Betaproteobacteria
Dechloromonas sp. A34 [CP102486]
4507572
4507498
-
Ala
TGC
-
¡û
>C231623039
CP119520
Betaproteobacteria
Telluria mixta ACM 1762 [CP119520]
1129041
1128967
-
Ala
TGC
-
¡û
>ENV000427
AF422545
Environmental sample from ENV division of INSDC
206
280
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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