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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.407840 (118 seq.)
>W1711579162
MNRJ01000065
Bacillota
Clostridiales bacterium 59_14 [MNRJ]
30390
30464
+
Glu
TTC
[ENA]
¡û
>C171077647
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
181224
181298
+
Glu
TTC
-
¡û
>C171077650
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
181572
181646
+
Glu
TTC
-
¡û
>w025874
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
2067955
2068029
+
Glu
TTC
[ENA]
¡û
>w025871
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
2067605
2067679
+
Glu
TTC
[ENA]
¡û
>WENV180208463
OBAI01228989
[OBAI] human gut metagenome; human gut
157
83
-
Glu
TTC
[ENA]
¢þ
>WENV180245410
OBDM01024180
[OBDM] human gut metagenome; human gut
273
347
+
Glu
TTC
[ENA]
¢þ
>WENV180337029
OBLG01010596
[OBLG] human gut metagenome; human gut
224
150
-
Glu
TTC
[ENA]
¢þ
>WENV180547211
OCIU01017988
[OCIU] human gut metagenome; human gut
1881
1955
+
Glu
TTC
[ENA]
¢þ
>WENV180564121
OCLD01023203
[OCLD] human gut metagenome; human gut
467
541
+
Glu
TTC
[ENA]
¢þ
>WENV180629684
OCQP01173122
[OCQP] human gut metagenome; human gut
219
145
-
Glu
TTC
[ENA]
¢þ
>WENV180741737
ODHH01000408
[ODHH] human metagenome; G_DNA_Stool
43706
43780
+
Glu
TTC
[ENA]
¢þ
>WENV180747421
ODHN01006276
[ODHN] human metagenome; G_DNA_Stool
190
116
-
Glu
TTC
[ENA]
¢þ
>WENV180760355
ODHZ01000632
[ODHZ] human metagenome; G_DNA_Stool
1577
1503
-
Glu
TTC
[ENA]
¢þ
>WENV180850347
ODKV01004988
[ODKV] human metagenome; G_DNA_Stool
137
63
-
Glu
TTC
[ENA]
¢þ
>WENV180962813
ODUN01030916
[ODUN] human metagenome; G_DNA_Stool
780
706
-
Glu
TTC
[ENA]
¢þ
>WENV180969281
ODUU01000084
[ODUU] human metagenome; G_DNA_Stool
64120
64046
-
Glu
TTC
[ENA]
¢þ
>WENV181024285
ODWX01053431
[ODWX] human metagenome; G_DNA_Stool
785
711
-
Glu
TTC
[ENA]
¢þ
>WENV181037201
ODXP01019711
[ODXP] human metagenome; G_DNA_Stool
82
8
-
Glu
TTC
[ENA]
¢þ
>WENV181061953
ODYN01029508
[ODYN] human metagenome; G_DNA_Stool
553
479
-
Glu
TTC
[ENA]
¢þ
>WENV181148004
OEHT01001104
[OEHT] human metagenome; G_DNA_Stool
22333
22407
+
Glu
TTC
[ENA]
¢þ
>WENV181637599
OGNB01017502
[OGNB] metagenome; Human gut stool
1457
1531
+
Glu
TTC
[ENA]
¢þ
>WENV181682477
OGOU01009994
[OGOU] human gut metagenome; faeces
3045
3119
+
Glu
TTC
[ENA]
¢þ
>WENV181701431
OGPH01001127
[OGPH] human gut metagenome; faeces
22284
22358
+
Glu
TTC
[ENA]
¢þ
>WENV181705317
OGPK01005066
[OGPK] human gut metagenome; faeces
6030
6104
+
Glu
TTC
[ENA]
¢þ
>WENV181789845
OGRO01047996
[OGRO] human gut metagenome; faeces
192
118
-
Glu
TTC
[ENA]
¢þ
>WENV181833815
OGUQ01009941
[OGUQ] metagenome; Human gut stool
2847
2773
-
Glu
TTC
[ENA]
¢þ
>WENV181864453
OGWU01000523
[OGWU] human gut metagenome; faeces
237
163
-
Glu
TTC
[ENA]
¢þ
>WENV181866055
OGWV01001249
[OGWV] human gut metagenome; faeces
594
520
-
Glu
TTC
[ENA]
¢þ
>WENV181897345
OGXT01000087
[OGXT] human gut metagenome; faeces
39148
39222
+
Glu
TTC
[ENA]
¢þ
>WENV181928964
OGYO01007005
[OGYO] human gut metagenome; faeces
4972
4898
-
Glu
TTC
[ENA]
¢þ
>WENV181943531
OGYZ01015933
[OGYZ] human gut metagenome; faeces
2053
2127
+
Glu
TTC
[ENA]
¢þ
>WENV181994753
OHAT01000103
[OHAT] human gut metagenome; faeces
32955
32881
-
Glu
TTC
[ENA]
¢þ
>WENV182058243
OHEP01005076
[OHEP] human gut metagenome; feces
137
63
-
Glu
TTC
[ENA]
¢þ
>WENV182066867
OHFC01019576
[OHFC] human gut metagenome; feces
725
799
+
Glu
TTC
[ENA]
¢þ
>WENV182101690
OHHU01001161
[OHHU] human gut metagenome; feces
158
84
-
Glu
TTC
[ENA]
¢þ
>WENV182113139
OHIX01001702
[OHIX] human gut metagenome; feces
158
84
-
Glu
TTC
[ENA]
¢þ
>WENV182148747
OHLF01003990
[OHLF] human gut metagenome; feces
3105
3179
+
Glu
TTC
[ENA]
¢þ
>C08003346
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
87845
87919
+
Glu
TTC
[Ensembl]
¡û
>C08003349
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
88195
88269
+
Glu
TTC
[Ensembl]
¡û
>WENV182191940
OHOZ01000288
[OHOZ] human gut metagenome; feces
20777
20703
-
Glu
TTC
[ENA]
¢þ
>WENV182219851
OHQR01011334
[OHQR] human gut metagenome; feces
238
164
-
Glu
TTC
[ENA]
¢þ
>WENV182244657
OHSJ01001921
[OHSJ] human gut metagenome; feces
2479
2553
+
Glu
TTC
[ENA]
¢þ
>WENV182256188
OHTD01035818
[OHTD] human gut metagenome; feces
512
586
+
Glu
TTC
[ENA]
¢þ
>WENV182318826
OHYG01000076
[OHYG] human gut metagenome; feces
52449
52523
+
Glu
TTC
[ENA]
¢þ
>WENV182342922
OIAK01000043
[OIAK] human gut metagenome; feces
52051
52125
+
Glu
TTC
[ENA]
¢þ
>WENV182393459
OIEH01054235
[OIEH] human gut metagenome; human gut
493
567
+
Glu
TTC
[ENA]
¢þ
>WENV182398159
OIEN01000528
[OIEN] human gut metagenome; human gut
137
63
-
Glu
TTC
[ENA]
¢þ
>WENV182525302
OIWT01001823
[OIWT] human gut metagenome; faeces
4004
4078
+
Glu
TTC
[ENA]
¢þ
>WENV182537878
OIXH01022614
[OIXH] human gut metagenome; faeces
137
63
-
Glu
TTC
[ENA]
¢þ
>WENV182609604
OJJV01013175
[OJJV] metagenome; faeces
1057
1131
+
Glu
TTC
[ENA]
¢þ
>WENV182615670
OJKC01006278
[OJKC] metagenome; faeces
4800
4726
-
Glu
TTC
[ENA]
¢þ
>WENV182634256
OJKY01006829
[OJKY] metagenome; faeces
4019
4093
+
Glu
TTC
[ENA]
¢þ
>WENV182655560
OJMI01053729
[OJMI] human gut metagenome; feces
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV182884487
OKSC01000377
[OKSC] human gut metagenome; faeces
52402
52476
+
Glu
TTC
[ENA]
¢þ
>WENV182887421
OKSD01005114
[OKSD] human gut metagenome; faeces
137
63
-
Glu
TTC
[ENA]
¢þ
>WENV182900691
OKSU01003105
[OKSU] human gut metagenome; feces
2382
2456
+
Glu
TTC
[ENA]
¢þ
>WENV182902720
OKSW01047988
[OKSW] human gut metagenome; feces
435
361
-
Glu
TTC
[ENA]
¢þ
>WENV182932809
OKUV01000042
[OKUV] human gut metagenome; feces
27849
27775
-
Glu
TTC
[ENA]
¢þ
>WENV182945418
OKVK01000094
[OKVK] human gut metagenome; human gut
137
63
-
Glu
TTC
[ENA]
¢þ
>WENV183037914
OLGB01000020
[OLGB] human gut metagenome; faeces
79775
79849
+
Glu
TTC
[ENA]
¢þ
>WENV183131260
OLOA01023255
[OLOA] human gut metagenome; faeces
2127
2201
+
Glu
TTC
[ENA]
¢þ
>WENV183143470
OLOK01048076
[OLOK] human gut metagenome; faeces
99
25
-
Glu
TTC
[ENA]
¢þ
>WENV183143593
OLOL01000007
[OLOL] human gut metagenome; faeces
106544
106618
+
Glu
TTC
[ENA]
¢þ
>WENV183151442
OLOQ01000125
[OLOQ] human gut metagenome; faeces
29402
29328
-
Glu
TTC
[ENA]
¢þ
>WENV183155369
OLOS01000170
[OLOS] human gut metagenome; faeces
76096
76170
+
Glu
TTC
[ENA]
¢þ
>WENV183161374
OLOV01005556
[OLOV] human gut metagenome; faeces
6085
6159
+
Glu
TTC
[ENA]
¢þ
>WENV183162723
OLOW01001643
[OLOW] human gut metagenome; faeces
137
63
-
Glu
TTC
[ENA]
¢þ
>WENV183169277
OLPA01002057
[OLPA] human gut metagenome; faeces
158
84
-
Glu
TTC
[ENA]
¢þ
>WENV183175975
OLPF01001604
[OLPF] human gut metagenome; faeces
2364
2290
-
Glu
TTC
[ENA]
¢þ
>WENV183180984
OLPI01002126
[OLPI] human gut metagenome; faeces
848
774
-
Glu
TTC
[ENA]
¢þ
>WENV183196513
OLPU01001305
[OLPU] human gut metagenome; faeces
239
165
-
Glu
TTC
[ENA]
¢þ
>WENV183206802
OLQA01002864
[OLQA] human gut metagenome; faeces
12797
12871
+
Glu
TTC
[ENA]
¢þ
>WENV183270114
OLRV01003553
[OLRV] human gut metagenome; faeces
7337
7411
+
Glu
TTC
[ENA]
¢þ
>WENV183275774
OLRZ01000394
[OLRZ] human gut metagenome; faeces
37639
37713
+
Glu
TTC
[ENA]
¢þ
>WENV183279506
OLSB01000405
[OLSB] human gut metagenome; faeces
50018
50092
+
Glu
TTC
[ENA]
¢þ
>WENV183293198
OLSK01000086
[OLSK] human gut metagenome; faeces
1054
980
-
Glu
TTC
[ENA]
¢þ
>WENV183298428
OLSN01000142
[OLSN] human gut metagenome; faeces
55018
55092
+
Glu
TTC
[ENA]
¢þ
>WENV183315573
OLVS01000112
[OLVS] human gut metagenome; feces
43348
43274
-
Glu
TTC
[ENA]
¢þ
>WENV183325859
OLVZ01002723
[OLVZ] human gut metagenome; faeces
182
108
-
Glu
TTC
[ENA]
¢þ
>WENV183340341
OLWL01007956
[OLWL] human gut metagenome; feces
2470
2544
+
Glu
TTC
[ENA]
¢þ
>WENV183341790
OLWN01000167
[OLWN] human gut metagenome; feces
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV183353505
OLXB01000182
[OLXB] human gut metagenome; feces
43675
43749
+
Glu
TTC
[ENA]
¢þ
>WENV183355518
OLXD01004750
[OLXD] human gut metagenome; feces
2755
2829
+
Glu
TTC
[ENA]
¢þ
>WENV183359337
OLXH01033309
[OLXH] human gut metagenome; feces
693
767
+
Glu
TTC
[ENA]
¢þ
>WENV183362049
OLXK01001581
[OLXK] human gut metagenome; feces
132
58
-
Glu
TTC
[ENA]
¢þ
>WENV183373330
OLXY01000163
[OLXY] human gut metagenome; feces
158
84
-
Glu
TTC
[ENA]
¢þ
>WENV183374294
OLXZ01000486
[OLXZ] human gut metagenome; feces
17865
17939
+
Glu
TTC
[ENA]
¢þ
>WENV183378423
OLYC01000537
[OLYC] human gut metagenome; feces
18054
18128
+
Glu
TTC
[ENA]
¢þ
>WENV183383512
OLYM01009305
[OLYM] human gut metagenome; feces
2417
2491
+
Glu
TTC
[ENA]
¢þ
>WENV183383791
OLYN01000017
[OLYN] human gut metagenome; feces
29036
28962
-
Glu
TTC
[ENA]
¢þ
>WENV183423111
OMBG01000102
[OMBG] human gut metagenome; feces
29031
28957
-
Glu
TTC
[ENA]
¢þ
>WENV183433353
OMBU01010931
[OMBU] human gut metagenome; feces
107
181
+
Glu
TTC
[ENA]
¢þ
>WENV183434679
OMBZ01024984
[OMBZ] human gut metagenome; feces
813
887
+
Glu
TTC
[ENA]
¢þ
>WENV183467843
OMED01015891
[OMED] human gut metagenome; feces
1320
1394
+
Glu
TTC
[ENA]
¢þ
>WENV183519579
OMNT01001174
[OMNT] human gut metagenome; faeces
100
26
-
Glu
TTC
[ENA]
¢þ
>WENV183646030
OQVQ01065500
[OQVQ] human gut metagenome; human gut
158
84
-
Glu
TTC
[ENA]
¢þ
>WENV183654577
OQWD01000004
[OQWD] human gut metagenome; human gut
104780
104854
+
Glu
TTC
[ENA]
¢þ
>WENV183708426
PDWI01015998
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7223
7297
+
Glu
TTC
[ENA]
¢þ
>WENV183712355
PDWI01097057
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1704
1778
+
Glu
TTC
[ENA]
¢þ
>WENV183717921
PDWJ01001980
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
18822
18748
-
Glu
TTC
[ENA]
¢þ
>WENV183775952
PPYF01075177
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1645
1719
+
Glu
TTC
[ENA]
¢þ
>WENV170050878
CDZB01046337
[CDZB] gut metagenome; human stools
133
59
-
Glu
TTC
[ENA]
¢þ
>W09133457
ACPD01000003
Bacillota
Clostridium cellulovorans 743B [ACPD]
151109
151035
-
Glu
TTC
[ENA]
¡û
>W09133502
ACPD01000109
Bacillota
Clostridium cellulovorans 743B [ACPD]
13
87
+
Glu
TTC
[ENA]
¡û
>C09103259
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
87845
87919
+
Glu
TTC
[Ensembl]
¡û
>C09103262
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
88195
88269
+
Glu
TTC
[Ensembl]
¡û
>W1910637538
LQGW01000035
Bacillota
Clostridiaceae bacterium JG1575 [LQGW]
63434
63360
-
Glu
TTC
[ENA]
¡û
>W1910637541
LQGW01000035
Bacillota
Clostridiaceae bacterium JG1575 [LQGW]
63174
63100
-
Glu
TTC
[ENA]
¡û
>W1510060481
CCXI01000144
Bacillota
Clostridium polynesiense MS1 [CCXI]
6689
6615
-
Glu
TTC
[ENA]
¡û
>W1510060484
CCXI01000144
Bacillota
Clostridium polynesiense MS1 [CCXI]
6434
6360
-
Glu
TTC
[ENA]
¡û
>W1510060497
CCXI01000159
Bacillota
Clostridium polynesiense MS1 [CCXI]
40831
40757
-
Glu
TTC
[ENA]
¡û
>C10102754
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
104243
104317
+
Glu
TTC
[Ensembl]
¡û
>C10102789
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
5226431
5226357
-
Glu
TTC
[Ensembl]
¡û
>W11184308
BABR01000080
Bacillota
Clostridium cellulovorans 743B [BABR]
4626
4552
-
Glu
TTC
[ENA]
¡û
>W1710588669
FQZO01000002
Bacillota
Clostridium amylolyticum [FQZO]
538497
538423
-
Glu
TTC
[ENA]
¡û
>W1710588672
FQZO01000002
Bacillota
Clostridium amylolyticum [FQZO]
538244
538170
-
Glu
TTC
[ENA]
¡û
>W1710588728
FQZO01000015
Bacillota
Clostridium amylolyticum [FQZO]
220
294
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK