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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.409467 (24 seq.)
>W1711252470
LYPA01000050
Bacillota
Paenibacillus oryzae [LYPA]
130286
130212
-
Gln
TTG
[ENA]
¡û
>W08007945
ABKS01000010
Bacillota
Paenibacillus sp. JDR-2 [ABKS]
2650
2724
+
Gln
TTG
[ENA]
¡û
>W08007972
ABKS01000051
Bacillota
Paenibacillus sp. JDR-2 [ABKS]
157
231
+
Gln
TTG
[ENA]
¡û
>WENV183735060
PJUA01000634
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
13946
13872
-
Gln
TTG
[ENA]
¢þ
>WENV183735131
PJUA01001177
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
6241
6167
-
Gln
TTG
[ENA]
¢þ
>C191106156
CP033433
Bacillota
Cohnella candidum 18JY8-7 [CP033433]
3605524
3605450
-
Gln
TTG
-
¡û
>C191143876
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
3750976
3751050
+
Gln
TTG
-
¡û
>C191143925
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
2333319
2333245
-
Gln
TTG
-
¡û
>C191143942
CP035492
Bacillota
Paenibacillus protaetiae FW100M-2 [CP035492]
1976013
1975939
-
Gln
TTG
-
¡û
>W1910018464
BDQX01000102
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
75
149
+
Gln
TTG
[ENA]
¡û
>W1910154702
BILY01000085
Bacillota
Paenibacillus glycanilyticus NBRC 16618 [BILY]
86
160
+
Gln
TTG
[ENA]
¡û
>W1910155278
BIML01000016
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
44515
44441
-
Gln
TTG
[ENA]
¡û
>C09108188
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
1171638
1171712
+
Gln
TTG
[Ensembl]
¡û
>C09108212
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
1316145
1316219
+
Gln
TTG
[Ensembl]
¡û
>C09108232
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
6471938
6471864
-
Gln
TTG
[Ensembl]
¡û
>W1910913874
NHRJ02000003
Bacillota
Paenibacillus xerothermodurans ATCC 27380 [NHRJ]
1285
1358
+
Gln
TTG
[ENA]
¡û
>W1911779731
QXQB01000001
Bacillota
Paenibacillus pinisoli JCM 19203 [QXQB]
1583797
1583723
-
Gln
TTG
[ENA]
¡û
>W1911779758
QXQB01000003
Bacillota
Paenibacillus pinisoli JCM 19203 [QXQB]
866879
866805
-
Gln
TTG
[ENA]
¡û
>W1810608893
QGTQ01000024
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
101090
101016
-
Gln
TTG
[ENA]
¡û
>W1810608913
QGTQ01000036
Bacillota
Paenibacillus cellulosilyticus CECT 5696 [QGTQ]
1152
1226
+
Gln
TTG
[ENA]
¡û
>W1611017258
LYPA01000050
Bacillota
Paenibacillus oryzae [LYPA]
130286
130212
-
Gln
TTG
[ENA]
¡û
>W1710523752
FNIF01000024
Bacillota
Paenibacillus sp. yr247 [FNIF]
621
694
+
Gln
TTG
[ENA]
¡û
>W1710535937
FNSW01000001
Bacillota
Paenibacillus sp. GP183 [FNSW]
4636916
4636989
+
Gln
TTG
[ENA]
¡û
>W1710535956
FNSW01000001
Bacillota
Paenibacillus sp. GP183 [FNSW]
3208037
3207963
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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