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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.409613 (23 seq.)
>W1711384836
MEDL01000022
Betaproteobacteria
Acidovorax sp. SCN 68-22 [MEDL]
24588
24514
-
Arg
CCT
[ENA]
¡û
>W1711384854
MEDL01000154
Betaproteobacteria
Acidovorax sp. SCN 68-22 [MEDL]
75
1
-
Arg
CCT
[ENA]
¡û
>W1711386814
MEFU01000038
Betaproteobacteria
Comamonadaceae bacterium SCN 68-20 [MEFU]
31575
31649
+
Arg
CCT
[ENA]
¡û
>W131233956
AUKK01000076
Betaproteobacteria
Glomeribacter sp. 1016415 [AUKK]
90132
90058
-
Arg
CCT
[ENA]
¡û
>C171033728
CP014839
Betaproteobacteria
Pandoraea thiooxydans ATSB16 [CP014839]
1016574
1016648
+
Arg
CCT
-
¡û
>w019547
AAUG01000016
Betaproteobacteria
Paraburkholderia phymatum STM815 [AAUG]
66824
66753
-
Arg
CCT
[ENA]
¡û
>W141278153
JAFD01000014
Betaproteobacteria
Burkholderia sp. UYPR1.413 [JAFD]
126103
126177
+
Arg
CCT
[ENA]
¡û
>C08001985
CP001043
Betaproteobacteria
Paraburkholderia phymatum STM815 [CP001043, CP001044]
2392195
2392269
+
Arg
CCT
[Ensembl]
¡û
>WENV170009856
APMI01003989
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
75
1
-
Arg
CCT
[ENA]
¢þ
>WENV170012377
APMI01164575
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
882
956
+
Arg
CCT
[ENA]
¢þ
>C181158583
CP027669
Betaproteobacteria
Simplicispira suum SC1-8 [CP027669]
2558943
2558869
-
Arg
CCT
-
¡û
>C191001073
AP018150
Betaproteobacteria
Mycoavidus cysteinexigens B1-EB [AP018150]
1584006
1583932
-
Arg
CCT
-
¡û
>W1810200755
PNXZ01000022
Betaproteobacteria
Trinickia caryophylli Ballard 720 [PNXZ]
23652
23726
+
Arg
CCT
[ENA]
¡û
>W1810580614
QETI01000002
Betaproteobacteria
Comamonas sp. JNW [QETI]
267476
267402
-
Arg
CCT
[ENA]
¡û
>W1810692909
QLKX01000021
Betaproteobacteria
Trinickia caryophylli HAMBI_2159 [QLKX]
114852
114778
-
Arg
CCT
[ENA]
¡û
>C151084529
CP011568
Betaproteobacteria
Pandoraea thiooxydans DSM 25325 [CP011568]
621033
621107
+
Arg
CCT
-
¡û
>W1510013071
BBOF01000016
Betaproteobacteria
bacterium endosymbiont of Mortierella elongata FMR23-6 [BBOF]
11304
11378
+
Arg
CCT
[ENA]
¡û
>W1510742418
CYIG01000007
Betaproteobacteria
Paenacidovorax caeni R-24608 [CYIG]
150576
150502
-
Arg
CCT
[ENA]
¡û
>W1610054052
BBSL01000090
Betaproteobacteria
Burkholderia sp. E7m39 [BBSL]
5711
5637
-
Arg
CCT
[ENA]
¡û
>W1610092432
CYGY01000024
Betaproteobacteria
Paraburkholderia piptadeniae STM 7183 [CYGY]
159088
159014
-
Arg
CCT
[ENA]
¡û
>W1710050751
BBSL01000090
Betaproteobacteria
Burkholderia sp. E7m39 [BBSL]
5711
5637
-
Arg
CCT
[ENA]
¡û
>W1710541239
FNYE01000004
Betaproteobacteria
Paraburkholderia diazotrophica [FNYE]
167357
167431
+
Arg
CCT
[ENA]
¡û
>W1710578851
FPBX01000001
Betaproteobacteria
Paenacidovorax caeni [FPBX]
113980
114054
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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