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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.410286 (64 seq.)
>W1711174843
LWEK01000159
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
485
559
+
Gln
TTG
[ENA]
¡û
>W1711174923
LWEK01002097
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
694
768
+
Gln
TTG
[ENA]
¡û
>W1711176225
LWFG01000446
Gammaproteobacteria
Oleiphilus sp. HI0065 [LWFG]
60572
60646
+
Gln
TTG
[ENA]
¡û
>W1711176257
LWFG01001656
Gammaproteobacteria
Oleiphilus sp. HI0065 [LWFG]
579
505
-
Gln
TTG
[ENA]
¡û
>W1711176297
LWFH01000113
Gammaproteobacteria
Oleiphilus sp. HI0066 [LWFH]
29507
29433
-
Gln
TTG
[ENA]
¡û
>W1711176532
LWFL01000397
Gammaproteobacteria
Oleiphilus sp. HI0071 [LWFL]
477
551
+
Gln
TTG
[ENA]
¡û
>W1711176566
LWFL01001426
Gammaproteobacteria
Oleiphilus sp. HI0071 [LWFL]
49682
49608
-
Gln
TTG
[ENA]
¡û
>W1711177016
LWFT01000554
Gammaproteobacteria
Oleiphilus sp. HI0079 [LWFT]
2154
2080
-
Gln
TTG
[ENA]
¡û
>W1711177757
LWGF01000791
Gammaproteobacteria
Oleiphilus sp. HI0125 [LWGF]
62251
62325
+
Gln
TTG
[ENA]
¡û
>W1711177870
LWGI01000113
Gammaproteobacteria
Oleiphilus sp. HI0130 [LWGI]
17800
17726
-
Gln
TTG
[ENA]
¡û
>W1711178007
LWGK01000779
Gammaproteobacteria
Oleiphilus sp. HI0133 [LWGK]
81338
81264
-
Gln
TTG
[ENA]
¡û
>W1711178020
LWGK01001400
Gammaproteobacteria
Oleiphilus sp. HI0133 [LWGK]
281
207
-
Gln
TTG
[ENA]
¡û
>w015097
AAOW01000021
Gammaproteobacteria
Neptuniibacter caesariensis MED92 [AAOW]
1933
2009
+
Gln
TTG
[ENA]
¡û
>WENV183717799
PDWJ01001656
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6360
6434
+
Gln
TTG
[ENA]
¡û
>WENV183717801
PDWJ01001656
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6589
6663
+
Gln
TTG
[ENA]
¡û
>WENV170150758
CEOC01154193
[CEOC] marine metagenome genome assembly TARA_036_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
391
317
-
Gln
TTG
[ENA]
¡û
>WENV170781568
MAAB01038304
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
9955
9881
-
Gln
TTG
[ENA]
¡û
>WENV170781570
MAAB01038304
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
9721
9647
-
Gln
TTG
[ENA]
¡û
>WENV170834225
MDSZ01093963
[MDSZ] marine metagenome; seawater
66027
66101
+
Gln
TTG
[ENA]
¡û
>W2110496051
JAFFZO010000008
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
51291
51217
-
Gln
TTG
[ENA]
¡û
>W2110496053
JAFFZO010000008
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
47387
47313
-
Gln
TTG
[ENA]
¡û
>W2110496055
JAFFZO010000008
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
47189
47115
-
Gln
TTG
[ENA]
¡û
>W2110496117
JAFFZP010000004
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
101946
102020
+
Gln
TTG
[ENA]
¡û
>W2110496119
JAFFZP010000004
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
105850
105924
+
Gln
TTG
[ENA]
¡û
>W2110496121
JAFFZP010000004
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
106048
106122
+
Gln
TTG
[ENA]
¡û
>W2110500806
JAFIDL010000003
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
116749
116675
-
Gln
TTG
[ENA]
¡û
>W2110500808
JAFIDL010000003
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
111300
111226
-
Gln
TTG
[ENA]
¡û
>W2110500810
JAFIDL010000003
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
111108
111034
-
Gln
TTG
[ENA]
¡û
>W2110500811
JAFIDL010000003
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
110932
110858
-
Gln
TTG
[ENA]
¡û
>W2110612270
JAHKQE010000002
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
90472
90546
+
Gln
TTG
[ENA]
¡û
>W2110612272
JAHKQE010000002
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
94387
94461
+
Gln
TTG
[ENA]
¡û
>W2110612274
JAHKQE010000002
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
94658
94732
+
Gln
TTG
[ENA]
¡û
>C231011238
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
4101725
4101799
+
Gln
TTG
-
¡û
>C231011240
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
4107236
4107310
+
Gln
TTG
-
¡û
>C231011242
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
4107428
4107502
+
Gln
TTG
-
¡û
>C231011243
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
4107544
4107618
+
Gln
TTG
-
¡û
>C231011393
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
3844482
3844556
+
Gln
TTG
-
¡û
>C231011395
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
3849917
3849991
+
Gln
TTG
-
¡û
>C231011397
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
3850109
3850183
+
Gln
TTG
-
¡û
>C231011398
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
3850285
3850359
+
Gln
TTG
-
¡û
>C231011471
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
4191341
4191415
+
Gln
TTG
-
¡û
>C231011473
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
4195245
4195319
+
Gln
TTG
-
¡û
>C231011475
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
4195444
4195518
+
Gln
TTG
-
¡û
>C241010924
AP027292
Gammaproteobacteria
Neptuniibacter halophilus LMG 25378 [AP027292]
1106667
1106741
+
Gln
TTG
-
¡û
>W1610983156
LWEK01000159
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
485
559
+
Gln
TTG
[ENA]
¡û
>W1610983236
LWEK01002097
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
694
768
+
Gln
TTG
[ENA]
¡û
>W1610984538
LWFG01000446
Gammaproteobacteria
Oleiphilus sp. HI0065 [LWFG]
60572
60646
+
Gln
TTG
[ENA]
¡û
>W1610984570
LWFG01001656
Gammaproteobacteria
Oleiphilus sp. HI0065 [LWFG]
579
505
-
Gln
TTG
[ENA]
¡û
>W1610984610
LWFH01000113
Gammaproteobacteria
Oleiphilus sp. HI0066 [LWFH]
29507
29433
-
Gln
TTG
[ENA]
¡û
>W1610984708
LWFI01001111
Gammaproteobacteria
Oleiphilus sp. HI0067 [LWFI]
16936
17010
+
Gln
TTG
[ENA]
¡û
>W1610984845
LWFL01000397
Gammaproteobacteria
Oleiphilus sp. HI0071 [LWFL]
477
551
+
Gln
TTG
[ENA]
¡û
>W1610984879
LWFL01001426
Gammaproteobacteria
Oleiphilus sp. HI0071 [LWFL]
49682
49608
-
Gln
TTG
[ENA]
¡û
>W1610984967
LWFN01000224
Gammaproteobacteria
Oleiphilus sp. HI0073 [LWFN]
60919
60993
+
Gln
TTG
[ENA]
¡û
>W1610985037
LWFN01002272
Gammaproteobacteria
Oleiphilus sp. HI0073 [LWFN]
1226
1300
+
Gln
TTG
[ENA]
¡û
>W1610985329
LWFT01000554
Gammaproteobacteria
Oleiphilus sp. HI0079 [LWFT]
2154
2080
-
Gln
TTG
[ENA]
¡û
>W1610985385
LWFU01000659
Gammaproteobacteria
Oleiphilus sp. HI0080 [LWFU]
14
88
+
Gln
TTG
[ENA]
¡û
>W1610985760
LWGB01000335
Gammaproteobacteria
Oleiphilus sp. HI0118 [LWGB]
1186
1260
+
Gln
TTG
[ENA]
¡û
>W1610985811
LWGB01002050
Gammaproteobacteria
Oleiphilus sp. HI0118 [LWGB]
281624
281550
-
Gln
TTG
[ENA]
¡û
>W1610985936
LWGD01000391
Gammaproteobacteria
Oleiphilus sp. HI0122 [LWGD]
220
146
-
Gln
TTG
[ENA]
¡û
>W1610985966
LWGD01001692
Gammaproteobacteria
Oleiphilus sp. HI0122 [LWGD]
35412
35338
-
Gln
TTG
[ENA]
¡û
>W1610986070
LWGF01000791
Gammaproteobacteria
Oleiphilus sp. HI0125 [LWGF]
62251
62325
+
Gln
TTG
[ENA]
¡û
>W1610986183
LWGI01000113
Gammaproteobacteria
Oleiphilus sp. HI0130 [LWGI]
17800
17726
-
Gln
TTG
[ENA]
¡û
>W1610986320
LWGK01000779
Gammaproteobacteria
Oleiphilus sp. HI0133 [LWGK]
81338
81264
-
Gln
TTG
[ENA]
¡û
>W1610986333
LWGK01001400
Gammaproteobacteria
Oleiphilus sp. HI0133 [LWGK]
281
207
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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