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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.410439 (15 seq.)
>WENV180593001
OCOW01178630
[OCOW] marine metagenome; Sterivex cartridges
332
260
-
Thr
GGT
[ENA]
¡û
>WENV170116612
CENG01180426
[CENG] marine metagenome genome assembly TARA_007_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
118
192
+
Thr
GGT
[ENA]
¡û
>WENV170117690
CENJ01024060
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
120
194
+
Thr
GGT
[ENA]
¡û
>WENV170161515
CEOK01343541
[CEOK] marine metagenome genome assembly TARA_030_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
927
853
-
Thr
GGT
[ENA]
¡û
>C181225825
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
1278315
1278243
-
Thr
GGT
-
¡û
>W2010685538
JACEUX010000005
Bacteroidota
Chryseobacterium sp. cx-624 [JACEUX]
73863
73935
+
Thr
GGT
[ENA]
¡û
>W2011493788
RWJG01000016
Bacteroidota
Chryseobacterium sp. XH07 [RWJG]
478870
478798
-
Thr
GGT
[ENA]
¡û
>W2011493808
RWJH01000002
Bacteroidota
Chryseobacterium sp. YLOS41 [RWJH]
250051
250123
+
Thr
GGT
[ENA]
¡û
>C201150243
CP044507
Bacteroidota
Chryseobacterium sp. SNU WT7 [CP044507]
2252105
2252177
+
Thr
GGT
-
¡û
>C201302675
CP059472
Bacteroidota
Chryseobacterium sp. cx-624 [CP059472]
1255899
1255971
+
Thr
GGT
-
¡û
>W2110739937
JAJEWK010000003
Bacteroidota
Chryseobacterium sp. MFBS3-17 [JAJEWK]
142767
142695
-
Thr
GGT
[ENA]
¡û
>C231538778
CP110854
Bacteroidota
Saprospira grandis WH [CP110854]
2283949
2284023
+
Thr
GGT
-
¡û
>C231582850
CP116808
Bacteroidota
Saprospira sp. CCB-QB6 [CP116808]
2249230
2249304
+
Thr
GGT
-
¡û
>C121003033
CP002831
Bacteroidota
Saprospira grandis str. Lewin [CP002831]
2339394
2339468
+
Thr
GGT
[Ensembl]
¡û
>W121017439
AGRT01000023
Bacteroidota
Saprospira grandis DSM 2844 [AGRT]
177491
177417
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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