This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.410494 (12 seq.)
>W1711422991
MICC01000120
Campylobacterota
Sulfurimonas sp. RIFOXYB12_FULL_35_9 [MICC]
6471
6397
-
Gln
TTG
[ENA]
¡û
>W1711423057
MICG01000612
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_36_11 [MICG]
474
403
-
Gln
TTG
[ENA]
¡û
>C171057200
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
1663829
1663903
+
Gln
CTG
-
¡û
>C171118605
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
1670858
1670932
+
Gln
CTG
-
¡û
>WENV170005920
AMQJ01004561
[AMQJ] sediment metagenome; subsurface aquifer sediment
5407
5333
-
Gln
TTG
[ENA]
¡û
>C181078328
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
1593463
1593537
+
Gln
CTG
-
¡û
>W1910744552
MIBX01000043
Campylobacterota
Sulfurimonas sp. RIFCSPHIGHO2_12_FULL_36_9 [MIBX]
663
589
-
Gln
TTG
[ENA]
¡û
>C151018376
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
1649838
1649912
+
Gln
CTG
[Ensembl]
¡û
>W2010877984
MIBX01000043
Campylobacterota
Sulfurimonas sp. RIFCSPHIGHO2_12_FULL_36_9 [MIBX]
663
589
-
Gln
TTG
[ENA]
¡û
>C241048704
CP039734
Campylobacterota
Sulfurospirillum diekertiae ACSDCE [CP039734]
1468835
1468909
+
Gln
CTG
-
¡û
>C241070533
CP042966
Campylobacterota
Sulfurospirillum multivorans N [CP042966]
1651906
1651980
+
Gln
CTG
-
¡û
>C241096855
CP045453
Campylobacterota
Sulfurospirillum diekertiae ACSTCE [CP045453]
1434350
1434424
+
Gln
CTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK