This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.410587 (34 seq.)
>C171073685
CP018139
Gammaproteobacteria
Halomonas aestuarii Hb3 [CP018139]
1368435
1368361
-
Gln
TTG
-
¡û
>C171092316
CP019326
Gammaproteobacteria
Halomonas sp. 1513 [CP019326]
2773541
2773615
+
Gln
TTG
-
¡û
>C171092329
CP019326
Gammaproteobacteria
Halomonas sp. 1513 [CP019326]
3759719
3759645
-
Gln
TTG
-
¡û
>W141212676
AZQX01000147
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
17538
17612
+
Gln
TTG
[ENA]
¡û
>WENV170680302
LFCJ01007564
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
1939
1865
-
Gln
TTG
[ENA]
¡û
>WENV170683039
LFIK01003706
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
544
618
+
Gln
TTG
[ENA]
¡û
>WENV170702470
LKMJ01002127
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
11170
11244
+
Gln
TTG
[ENA]
¡û
>W1911245464
NSKB01000014
Gammaproteobacteria
Halomonas sp. WRN001 [NSKB]
43408
43334
-
Gln
TTG
[ENA]
¡û
>W1810199991
PNRF01000008
Gammaproteobacteria
Halomonas endophytica MC28 [PNRF]
37451
37377
-
Gln
TTG
[ENA]
¡û
>W1810423967
PYUD01000005
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27T [PYUD]
171128
171054
-
Gln
TTG
[ENA]
¡û
>W1810444373
PZJP01000008
Gammaproteobacteria
Salinicola aestuarinus CPA62 [PZJP]
48065
47991
-
Gln
CTG
[ENA]
¡û
>W1810760693
QPKI01000033
Gammaproteobacteria
Halomonas sp. DQ26W [QPKI]
16830
16904
+
Gln
TTG
[ENA]
¡û
>C151102524
LM655252
Gammaproteobacteria
Candidatus Evansia muelleri [LM655252]
16235
16163
-
Gln
TTG
[Ensembl]
¡û
>W2010673476
JACCDF010000007
Gammaproteobacteria
Halomonas salicampi BH103 [JACCDF]
145113
145187
+
Gln
TTG
[ENA]
¡û
>W2011070365
NSKB01000014
Gammaproteobacteria
Halomonas sp. WRN001 [NSKB]
43408
43334
-
Gln
TTG
[ENA]
¡û
>W2011617449
SLTR01000013
Gammaproteobacteria
Halomonas sp. 204 [SLTR]
65007
65081
+
Gln
TTG
[ENA]
¡û
>W2012326953
WHMA01000021
Gammaproteobacteria
Halomonas sp. NO4 [WHMA]
37572
37498
-
Gln
TTG
[ENA]
¡û
>W2012446503
WUTS01000001
Gammaproteobacteria
Halomonas sp. D1-1 [WUTS]
3090892
3090818
-
Gln
TTG
[ENA]
¡û
>W2012446529
WUTT01000001
Gammaproteobacteria
Halomonas alimentaria DSM 15356 [WUTT]
104438
104512
+
Gln
TTG
[ENA]
¡û
>W2110051384
BNAE01000005
Gammaproteobacteria
Halomonas urumqiensis CGMCC 1.12917 [BNAE]
18686
18760
+
Gln
TTG
[ENA]
¡û
>W2110240383
JACNMQ010000001
Gammaproteobacteria
Halomonas sp. M20 [JACNMQ]
656093
656019
-
Gln
TTG
[ENA]
¡û
>W2110286750
JACXZT010000019
Gammaproteobacteria
Halomonas sp. ML-15 [JACXZT]
2146249
2146323
+
Gln
TTG
[ENA]
¡û
>W2110358966
JADNRL010000008
Gammaproteobacteria
Halomonas sp. KAO [JADNRL]
4077
4151
+
Gln
TTG
[ENA]
¡û
>W2110592330
JAHCLU010000008
Gammaproteobacteria
Halomonas sp. TRM85114 [JAHCLU]
193116
193042
-
Gln
TTG
[ENA]
¡û
>W2110659509
JAHXBV010000042
Gammaproteobacteria
Halomonas sp. ANAO-440 [JAHXBV]
17351
17425
+
Gln
TTG
[ENA]
¡û
>C211093706
CP053382
Gammaproteobacteria
Halomonas sp. MCCC 1A13316 [CP053382]
4161094
4161020
-
Gln
TTG
-
¡û
>C211116327
CP058321
Gammaproteobacteria
Halomonas sp. SH5A2 [CP058321]
2485602
2485676
+
Gln
TTG
-
¡û
>W1510071579
CDGR01000035
Gammaproteobacteria
Halomonas salina B6 [CDGR]
33239
33313
+
Gln
TTG
[ENA]
¡û
>C241131638
CP048812
Gammaproteobacteria
Halomonas socia CKY01 [CP048812]
1663468
1663542
+
Gln
TTG
-
¡û
>C161068816
CP014226
Gammaproteobacteria
Halomonas chromatireducens AGD 8-3 [CP014226]
584519
584593
+
Gln
TTG
[Ensembl]
¡û
>W1710519444
FNES01000024
Gammaproteobacteria
Halomonas gudaonensis [FNES]
8318
8244
-
Gln
TTG
[ENA]
¡û
>W1710544876
FOBC01000012
Gammaproteobacteria
Halomonas daqiaonensis [FOBC]
9276
9350
+
Gln
TTG
[ENA]
¡û
>W1710582945
FQUJ01000013
Gammaproteobacteria
Halomonas ilicicola DSM 19980 [FQUJ]
111459
111533
+
Gln
TTG
[ENA]
¡û
>W1710582955
FQUJ01000022
Gammaproteobacteria
Halomonas ilicicola DSM 19980 [FQUJ]
17205
17279
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK