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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.410646 (36 seq.)
>W141242115
CAHY01000081
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
4041
4115
+
Gly
TCC
[ENA]
¡û
>WENV182542266
OJAX01000935
[OJAX] seawater metagenome; Sea water
83
157
+
Gly
TCC
[ENA]
¡û
>WENV182550015
OJBZ01001687
[OJBZ] seawater metagenome; Sea water
6447
6521
+
Gly
TCC
[ENA]
¡û
>WENV182555183
OJCY01007981
[OJCY] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¡û
>WENV182555772
OJDD01000525
[OJDD] seawater metagenome; Sea water
6490
6416
-
Gly
TCC
[ENA]
¡û
>WENV182562493
OJDZ01004855
[OJDZ] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¡û
>WENV182568114
OJEQ01000514
[OJEQ] seawater metagenome; Sea water
404
478
+
Gly
TCC
[ENA]
¡û
>WENV182568226
OJER01006628
[OJER] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¡û
>WENV182570660
OJFE01000853
[OJFE] seawater metagenome; Sea water
252
326
+
Gly
TCC
[ENA]
¡û
>WENV182572145
OJFL01000531
[OJFL] seawater metagenome; Sea water
18903
18977
+
Gly
TCC
[ENA]
¡û
>WENV182573467
OJFP01002165
[OJFP] seawater metagenome; Sea water
7084
7158
+
Gly
TCC
[ENA]
¡û
>WENV182574816
OJFS01002225
[OJFS] seawater metagenome; Sea water
4152
4226
+
Gly
TCC
[ENA]
¡û
>WENV182576857
OJFZ01000755
[OJFZ] seawater metagenome; Sea water
252
326
+
Gly
TCC
[ENA]
¡û
>WENV182576935
OJGB01000979
[OJGB] seawater metagenome; Sea water
278
204
-
Gly
TCC
[ENA]
¡û
>WENV182577862
OJGL01000478
[OJGL] seawater metagenome; Sea water
1306
1232
-
Gly
TCC
[ENA]
¡û
>WENV182581014
OJGW01051546
[OJGW] seawater metagenome; Sea water
391
317
-
Gly
TCC
[ENA]
¡û
>WENV182588695
OJHW01003552
[OJHW] seawater metagenome; Sea water
408
482
+
Gly
TCC
[ENA]
¡û
>WENV182591885
OJIO01011771
[OJIO] seawater metagenome; Sea water
1511
1437
-
Gly
TCC
[ENA]
¡û
>WENV170023871
BCQL01007281
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1478
1552
+
Gly
TCC
[ENA]
¡û
>C191217662
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
4151569
4151495
-
Gly
TCC
-
¡û
>W1910635647
LNJW01000053
Gammaproteobacteria
Candidatus Hamiltonella defensa [LNJW]
53039
53113
+
Gly
TCC
[ENA]
¡û
>W2010782807
LNJW01000053
Gammaproteobacteria
Candidatus Hamiltonella defensa [LNJW]
53039
53113
+
Gly
TCC
[ENA]
¡û
>W2110447139
JAESDJ010000034
Gammaproteobacteria
Alteromonas lipotrueae MD_674 [JAESDJ]
413
339
-
Gly
TCC
[ENA]
¡û
>W2110537483
JAGGDM010000036
Gammaproteobacteria
Alteromonas sp. K632G [JAGGDM]
5510
5584
+
Gly
TCC
[ENA]
¡û
>W2110556792
JAGJDY010000020
Gammaproteobacteria
Alteromonas sp. MMG017 [JAGJDY]
4137
4211
+
Gly
TCC
[ENA]
¡û
>W2110611785
JAHKPT010000003
Gammaproteobacteria
Aliiglaciecola lipolytica D2R05 [JAHKPT]
19802
19876
+
Gly
TCC
[ENA]
¡û
>W2110691104
JAIOUC010000024
Gammaproteobacteria
Alteromonas stellipolaris T18 [JAIOUC]
500
426
-
Gly
TCC
[ENA]
¡û
>W1510058866
CCVN01000125
Gammaproteobacteria
Candidatus Hamiltonella defensa defensa [Bemisia tabaci] [CCVN]
16056
15982
-
Gly
TCC
[ENA]
¡û
>C11100824
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
54514
54588
+
Gly
TCC
[Ensembl]
¡û
>C161051387
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
4067
4141
+
Gly
TCC
[Ensembl]
¡û
>C161071055
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
4025292
4025218
-
Gly
TCC
-
¡û
>C161086235
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
1734565
1734639
+
Gly
TCC
-
¡û
>C161086339
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
1709287
1709213
-
Gly
TCC
-
¡û
>C161108597
LN999831
Gammaproteobacteria
Candidatus Mikella endobia [LN999831]
106844
106770
-
Gly
TCC
[Ensembl]
¡û
>C161109702
LT594522
Gammaproteobacteria
secondary endosymbiont of Trabutina mannipara [LT594522]
282241
282167
-
Gly
TCC
[Ensembl]
¡û
>W121063693
AJLH01000011
Gammaproteobacteria
Candidatus Hamiltonella defensa defensa MED (Bemisia tabaci) [AJLH]
16883
16809
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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