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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.410957 (34 seq.)
>W131160993
AQXE01000002
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
216866
216940
+
Val
GAC
[ENA]
¡û
>W131224781
AUDB01000001
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
160056
159982
-
Val
GAC
[ENA]
¡û
>W131224871
AUDC01000012
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
279090
279164
+
Val
GAC
[ENA]
¡û
>W131099201
AOSV01000018
Thermodesulfobacteriota
Desulfocurvibacter africanus PCS [AOSV]
63190
63116
-
Val
GAC
[ENA]
¡û
>W131208387
ATHI01000026
Thermodesulfobacteriota
Alkalidesulfovibrio alkalitolerans DSM 16529 [ATHI]
473556
473630
+
Val
GAC
[ENA]
¡û
>W131208476
ATHV01000033
Thermodesulfobacteriota
Desulfovibrio sp. X2 [ATHV]
48315
48389
+
Val
GAC
[ENA]
¡û
>W131236074
AULZ01000030
Thermodesulfobacteriota
Desulfocurvibacter africanus DSM 2603 [AULZ]
20296
20222
-
Val
GAC
[ENA]
¡û
>C008057
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
872408
872482
+
Val
GAC
[Ensembl]
¡û
>C008158
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
2651339
2651265
-
Val
GAC
[Ensembl]
¡û
>WENV181909001
OGYB01004258
[OGYB] human gut metagenome; faeces
153
227
+
Val
GAC
[ENA]
¢þ
>W141201085
AZAO01000006
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
206066
205992
-
Val
GAC
[ENA]
¡û
>W141278202
JAFE01000002
Thermodesulfobacteriota
Desulfonatronum lacustre DSM 10312 [JAFE]
460128
460202
+
Val
GAC
[ENA]
¡û
>WENV183512622
OMKS01000915
[OMKS] sediment metagenome; hot spring sediment
7402
7476
+
Val
GAC
[ENA]
¢þ
>WENV183747193
PPCM01000390
[PPCM] marine sediment metagenome; marine sediment
2442
2368
-
Val
GAC
[ENA]
¢þ
>WENV183747234
PPCM01000500
[PPCM] marine sediment metagenome; marine sediment
3
77
+
Val
GAC
[ENA]
¢þ
>WENV170645361
JMSV01000840
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
1125
1199
+
Val
GAC
[ENA]
¢þ
>W09106222
AATW01000004
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
89190
89116
-
Val
GAC
[ENA]
¡û
>W09134078
ACQX01000014
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
41191
41117
-
Val
GAC
[ENA]
¡û
>C191000259
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
2576210
2576136
-
Val
GAC
-
¡û
>W141804570
JPIK01000004
Thermodesulfobacteriota
Desulfonatronum thiodismutans [JPIK]
290562
290636
+
Val
GAC
[ENA]
¡û
>W1910020630
BDUJ01000001
Thermodesulfobacteriota
Nitratidesulfovibrio sp. HK-II HK-II [BDUJ]
518405
518479
+
Val
GAC
[ENA]
¡û
>W1910182299
BJMT01000012
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
86867
86793
-
Val
GAC
[ENA]
¡û
>C141011923
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
3548801
3548875
+
Val
GAC
-
¡û
>C09104415
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
1194135
1194061
-
Val
GAC
[Ensembl]
¡û
>W1810445566
PZKN01000021
Thermodesulfobacteriota
Desulfonatronum sp. SC1 [PZKN]
61315
61241
-
Val
GAC
[ENA]
¡û
>C11107466
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
2654860
2654786
-
Val
GAC
[Ensembl]
¡û
>W1511534053
JYNO01000003
Thermodesulfobacteriota
Desulfonatronum thioautotrophicum ASO4-1 [JYNO]
32834
32908
+
Val
GAC
[ENA]
¡û
>W11162684
AFHE01000002
Thermodesulfobacteriota
Desulfocurvibacter africanus str. Walvis Bay [AFHE]
244936
245010
+
Val
GAC
[ENA]
¡û
>W11178810
AGFG01000028
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
4786
4712
-
Val
GAC
[ENA]
¡û
>C121009020
CP003221
Thermodesulfobacteriota
Desulfocurvibacter africanus subsp. africanus str. Walvis Bay [CP003221]
869289
869363
+
Val
GAC
[Ensembl]
¡û
>W1610046071
BBCB01000091
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
4059
4133
+
Val
GAC
[ENA]
¡û
>C131018105
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
3548801
3548875
+
Val
GAC
[Ensembl]
¡û
>W1710042867
BBCB01000091
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
4059
4133
+
Val
GAC
[ENA]
¡û
>W1710509926
FMXO01000009
Thermodesulfobacteriota
Desulfonatronum thiosulfatophilum [FMXO]
94853
94779
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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