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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411318 (49 seq.)
>W1710854545
LLXO01000020
Gammaproteobacteria
Entomohabitans teleogrylli [LLXO]
2896
2970
+
Gln
TTG
[ENA]
¡û
>W131238029
AUUA01000001
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [AUUA]
126894
126820
-
Gln
TTG
[ENA]
¡û
>W131238030
AUUA01000001
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [AUUA]
126772
126698
-
Gln
TTG
[ENA]
¡û
>W131238033
AUUA01000001
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [AUUA]
126279
126205
-
Gln
TTG
[ENA]
¡û
>W131229019
AUGL01000027
Gammaproteobacteria
Ferrimonas futtsuensis DSM 18154 [AUGL]
21802
21876
+
Gln
TTG
[ENA]
¡û
>W131229022
AUGL01000027
Gammaproteobacteria
Ferrimonas futtsuensis DSM 18154 [AUGL]
22091
22165
+
Gln
TTG
[ENA]
¡û
>W131229023
AUGL01000027
Gammaproteobacteria
Ferrimonas futtsuensis DSM 18154 [AUGL]
22288
22362
+
Gln
TTG
[ENA]
¡û
>W1711621737
MPDL01000320
Gammaproteobacteria
Dickeya dadantii [MPDL]
156
82
-
Gln
TTG
[ENA]
¡û
>C171045351
CP016043
Gammaproteobacteria
Edwardsiella hoshinae ATCC 35051 [CP016043]
950285
950211
-
Gln
TTG
-
¡û
>C171108421
CP020466
Gammaproteobacteria
Edwardsiella ictaluri RUSVM-1 [CP020466]
1372261
1372335
+
Gln
TTG
-
¡û
>W141231515
BAUC01000015
Gammaproteobacteria
Edwardsiella hoshinae NBRC 105699 = ATCC 33379 [BAUC]
75037
74963
-
Gln
TTG
[ENA]
¡û
>WENV170599193
FUWD010066407
[FUWD] metagenome; unknown
222
148
-
Gln
TTG
[ENA]
¢þ
>WENV170879464
MDTC01095741
[MDTC] marine metagenome; seawater
9
83
+
Gln
TTG
[ENA]
¢þ
>C181012431
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
2913239
2913313
+
Gln
TTG
-
¡û
>C181012432
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
2913436
2913510
+
Gln
TTG
-
¡û
>C181012435
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
2913803
2913877
+
Gln
TTG
-
¡û
>C181168589
CP028813
Gammaproteobacteria
Edwardsiella ictaluri MS-17-156 [CP028813]
2685815
2685741
-
Gln
TTG
-
¡û
>C181215544
LS483470
Gammaproteobacteria
Leminorella richardii NCTC12151 [LS483470]
2362951
2363025
+
Gln
TTG
-
¡û
>C181215545
LS483470
Gammaproteobacteria
Leminorella richardii NCTC12151 [LS483470]
2363072
2363146
+
Gln
TTG
-
¡û
>W141710673
JMPN01000012
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [JMPN]
123
197
+
Gln
TTG
[ENA]
¡û
>C09106004
CP001600
Gammaproteobacteria
Edwardsiella ictaluri 93-146 [CP001600]
2809121
2809195
+
Gln
TTG
[Ensembl]
¡û
>W1911075393
NMUO01000040
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
8533
8607
+
Gln
TTG
[ENA]
¡û
>W1911075394
NMUO01000040
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
8730
8804
+
Gln
TTG
[ENA]
¡û
>W1911075397
NMUO01000040
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
9097
9171
+
Gln
TTG
[ENA]
¡û
>W1810390151
PXYG01000005
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
194158
194084
-
Gln
TTG
[ENA]
¡û
>W1810390152
PXYG01000005
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
193960
193886
-
Gln
TTG
[ENA]
¡û
>W1810390155
PXYG01000005
Gammaproteobacteria
Zobellella endophytica 59N8 [PXYG]
193591
193517
-
Gln
TTG
[ENA]
¡û
>W1810390201
PXYH01000005
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
120427
120353
-
Gln
TTG
[ENA]
¡û
>W1810390202
PXYH01000005
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
120229
120155
-
Gln
TTG
[ENA]
¡û
>W1810390205
PXYH01000005
Gammaproteobacteria
Zobellella taiwanensis JCM 13381 [PXYH]
119867
119793
-
Gln
TTG
[ENA]
¡û
>W1810504601
QBLD01000001
Gammaproteobacteria
Edwardsiella ictaluri S97-773 [QBLD]
178153
178227
+
Gln
TTG
[ENA]
¡û
>W1810534561
QDAD01000008
Gammaproteobacteria
Edwardsiella ictaluri S07-698 [QDAD]
118225
118151
-
Gln
TTG
[ENA]
¡û
>W1810701344
QMED01000006
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
115444
115370
-
Gln
TTG
[ENA]
¡û
>W1810701345
QMED01000006
Gammaproteobacteria
Algibacillus agarilyticus RQJ05 [QMED]
115343
115269
-
Gln
TTG
[ENA]
¡û
>W1810758116
QPID01000008
Gammaproteobacteria
Corallincola holothuriorum C4 [QPID]
126614
126540
-
Gln
TTG
[ENA]
¡û
>W1810758119
QPID01000008
Gammaproteobacteria
Corallincola holothuriorum C4 [QPID]
119118
119044
-
Gln
TTG
[ENA]
¡û
>W1810758120
QPID01000008
Gammaproteobacteria
Corallincola holothuriorum C4 [QPID]
119010
118936
-
Gln
TTG
[ENA]
¡û
>W1810784321
QRAP01000008
Gammaproteobacteria
Enterobacillus tribolii DSM 103736 [QRAP]
190984
191058
+
Gln
TTG
[ENA]
¡û
>W1511644027
LDWX01000032
Gammaproteobacteria
Edwardsiella ictaluri LADL11-100 [LDWX]
16973
17047
+
Gln
TTG
[ENA]
¡û
>W1511646098
LEAL01000031
Gammaproteobacteria
Edwardsiella ictaluri LADL11-194 [LEAL]
17017
17091
+
Gln
TTG
[ENA]
¡û
>W1610041906
BAXG01000002
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
286982
286908
-
Gln
TTG
[ENA]
¡û
>W1610041934
BAXG01000028
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
34705
34631
-
Gln
TTG
[ENA]
¡û
>W121004055
AFJI01000053
Gammaproteobacteria
Edwardsiella ictaluri ATCC 33202 [AFJI]
56518
56444
-
Gln
TTG
[ENA]
¡û
>W1610716822
LLXO01000020
Gammaproteobacteria
Entomohabitans teleogrylli [LLXO]
2896
2970
+
Gln
TTG
[ENA]
¡û
>W1710039000
BAXG01000002
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
286982
286908
-
Gln
TTG
[ENA]
¡û
>W1710039028
BAXG01000028
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
34705
34631
-
Gln
TTG
[ENA]
¡û
>W1710519072
FNEM01000004
Gammaproteobacteria
Ferrimonas sediminum [FNEM]
335320
335394
+
Gln
TTG
[ENA]
¡û
>W1710519075
FNEM01000004
Gammaproteobacteria
Ferrimonas sediminum [FNEM]
335705
335779
+
Gln
TTG
[ENA]
¡û
>W1710519076
FNEM01000004
Gammaproteobacteria
Ferrimonas sediminum [FNEM]
335835
335909
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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