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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411549 (8 seq.)
>WENV180373048
OBOI01187741
[OBOI] sediment metagenome; sediment
113
185
+
Lys
CTT
[ENA]
¡û
>W1910733618
MHIV01000019
Unclassified
Candidatus Colwellbacteria bacterium RIFCSPHIGHO2_02_FULL_45_17 [MHIV]
3664
3592
-
Lys
TTT
[ENA]
¡û
>W1910733805
MHJA01000028
Unclassified
Candidatus Colwellbacteria bacterium RIFCSPLOWO2_02_FULL_45_11 [MHJA]
11366
11294
-
Lys
TTT
[ENA]
¡û
>W1910733898
MHJD01000023
Unclassified
Candidatus Colwellbacteria bacterium RIFCSPLOWO2_12_FULL_46_17 [MHJD]
3177
3105
-
Lys
TTT
[ENA]
¡û
>W2010867048
MHIV01000019
Unclassified
Candidatus Colwellbacteria bacterium RIFCSPHIGHO2_02_FULL_45_17 [MHIV]
3664
3592
-
Lys
TTT
[ENA]
¡û
>W2010867235
MHJA01000028
Unclassified
Candidatus Colwellbacteria bacterium RIFCSPLOWO2_02_FULL_45_11 [MHJA]
11366
11294
-
Lys
TTT
[ENA]
¡û
>W2010867328
MHJD01000023
Unclassified
Candidatus Colwellbacteria bacterium RIFCSPLOWO2_12_FULL_46_17 [MHJD]
3177
3105
-
Lys
TTT
[ENA]
¡û
>W1511614114
LCLD01000007
Unclassified
Parcubacteria group bacterium GW2011_GWB1_45_7 GW2011_GWB1_45_7 [LCLD]
3921
3847
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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