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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411585 (8 seq.)
>W1711418390
MHJX01000036
Unclassified
Candidatus Jacksonbacteria bacterium RIFOXYA2_FULL_44_7 [MHJX]
9077
9151
+
Arg
TCT
[ENA]
¡û
>W1910734323
MHJR01000051
Unclassified
Candidatus Jacksonbacteria bacterium RIFCSPHIGHO2_12_FULL_44_12 [MHJR]
613
539
-
Arg
TCT
[ENA]
¡û
>W1910734459
MHJU01000039
Unclassified
Candidatus Jacksonbacteria bacterium RIFCSPLOWO2_02_FULL_44_20 [MHJU]
10674
10748
+
Arg
TCT
[ENA]
¡û
>W1910734488
MHJV01000027
Unclassified
Candidatus Jacksonbacteria bacterium RIFCSPLOWO2_12_FULL_44_15b [MHJV]
70200
70274
+
Arg
TCT
[ENA]
¡û
>W2010867753
MHJR01000051
Unclassified
Candidatus Jacksonbacteria bacterium RIFCSPHIGHO2_12_FULL_44_12 [MHJR]
613
539
-
Arg
TCT
[ENA]
¡û
>W2010867889
MHJU01000039
Unclassified
Candidatus Jacksonbacteria bacterium RIFCSPLOWO2_02_FULL_44_20 [MHJU]
10674
10748
+
Arg
TCT
[ENA]
¡û
>W2010867918
MHJV01000027
Unclassified
Candidatus Jacksonbacteria bacterium RIFCSPLOWO2_12_FULL_44_15b [MHJV]
70200
70274
+
Arg
TCT
[ENA]
¡û
>W1511611733
LCIC01000004
Unclassified
Parcubacteria group bacterium GW2011_GWC2_44_17 GW2011_GWC2_44_17 [LCIC]
784
710
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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