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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411674 (50 seq.)
>W131231273
AUII01000020
Actinomycetota
Pseudonocardia asaccharolytica DSM 44247 [AUII]
61639
61568
-
Gln
TTG
[ENA]
¡û
>W1711343489
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
4125211
4125140
-
Gln
TTG
[ENA]
¡û
>W1711343539
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
4128268
4128197
-
Gln
TTG
[ENA]
¡û
>W1711343563
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
1343561
1343632
+
Gln
TTG
[ENA]
¡û
>W1711343651
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
2968273
2968200
-
Gln
TTG
[ENA]
¡û
>W1711343697
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
5765763
5765692
-
Gln
TTG
[ENA]
¡û
>W1711343737
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
3109138
3109211
+
Gln
TTG
[ENA]
¡û
>W1711343809
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
2365521
2365448
-
Gln
TTG
[ENA]
¡û
>W1711343845
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
3127904
3127977
+
Gln
TTG
[ENA]
¡û
>W1711343932
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
698100
698029
-
Gln
TTG
[ENA]
¡û
>W1711343983
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
459728
459655
-
Gln
TTG
[ENA]
¡û
>W1711386170
MEEZ01000283
Actinomycetota
Pseudonocardia sp. SCN 72-51 [MEEZ]
6090
6161
+
Gln
TTG
[ENA]
¡û
>W1711386215
MEFA01000284
Actinomycetota
Pseudonocardia sp. SCN 72-86 [MEFA]
6089
6160
+
Gln
TTG
[ENA]
¡û
>W1711387129
MEGH01000018
Actinomycetota
Pseudonocardia sp. SCN 73-27 [MEGH]
139801
139872
+
Gln
TTG
[ENA]
¡û
>W1711427799
MIFY01000022
Actinomycetota
Pseudonocardia autotrophica [MIFY]
182716
182643
-
Gln
TTG
[ENA]
¡û
>W1711427967
MIGB01000028
Actinomycetota
Pseudonocardia autotrophica [MIGB]
18548
18621
+
Gln
TTG
[ENA]
¡û
>W1711491772
MKJV01000139
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
2863
2934
+
Gln
TTG
[ENA]
¡û
>W1711491827
MKJX01000072
Actinomycetota
Pseudonocardia sp. CNS-139 [MKJX]
3130
3059
-
Gln
TTG
[ENA]
¡û
>W1711749103
MUMG01000063
Actinomycetota
Crossiella equi [MUMG]
24409
24480
+
Gln
TTG
[ENA]
¡û
>WENV180343188
OBLK01000111
[OBLK] soil metagenome; Clay
8731
8802
+
Gln
TTG
[ENA]
¢þ
>WENV180692414
OCZS010520639
[OCZS] soil metagenome; soil
223
152
-
Gln
TTG
[ENA]
¢þ
>WENV181295387
OFHI01032280
[OFHI] soil metagenome; Clay
341
270
-
Gln
TTG
[ENA]
¢þ
>WENV181297836
OFHL01000236
[OFHL] soil metagenome; Clay
878
949
+
Gln
TTG
[ENA]
¢þ
>WENV170023829
BCQL01005354
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
2388
2461
+
Gln
TTG
[ENA]
¢þ
>WENV170023926
BCQL01009966
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1064
993
-
Gln
TTG
[ENA]
¢þ
>WENV170024421
BCQL01057760
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
450
521
+
Gln
TTG
[ENA]
¢þ
>WENV170661180
JXWU01122582
[JXWU] soil metagenome; rice field; organic control Plot
312
241
-
Gln
TTG
[ENA]
¢þ
>C191005760
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
1007873
1007802
-
Gln
TTG
-
¡û
>W141757779
JNYD01000015
Actinomycetota
Pseudonocardia autotrophica [JNYD]
38997
39068
+
Gln
TTG
[ENA]
¡û
>W141761023
JOAL01000177
Actinomycetota
Actinoalloteichus caeruleus cyanogriseus [JOAL]
433
504
+
Gln
TTG
[ENA]
¡û
>W1910038441
BEGX01000128
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
42363
42434
+
Gln
TTG
[ENA]
¡û
>W1910182942
BJNH01000048
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
18542
18613
+
Gln
TTG
[ENA]
¡û
>W1910994824
NKYF01000001
Actinomycetota
Pseudonocardia sp. MH-G8 [NKYF]
1130393
1130464
+
Gln
TTG
[ENA]
¡û
>W1810121481
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
4112952
4112881
-
Gln
TTG
[ENA]
¡û
>W1810176386
PJPW02000029
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
1510
1439
-
Gln
TTG
[ENA]
¡û
>C151074991
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
4902271
4902342
+
Gln
TTG
-
¡û
>C151087162
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
4384038
4383965
-
Gln
TTG
-
¡û
>C151087187
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
4569762
4569833
+
Gln
TTG
-
¡û
>W10100204
ABFV01000012
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
95983
96056
+
Gln
TTG
[ENA]
¡û
>W10118383
ADUJ01000050
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
1992
1921
-
Gln
TTG
[ENA]
¡û
>W10128107
AEGE01000539
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
15734
15807
+
Gln
TTG
[ENA]
¡û
>W11100204
ABFV01000012
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [ABFV]
95983
96056
+
Gln
TTG
[ENA]
¡û
>C11117099
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
932130
932059
-
Gln
TTG
[Ensembl]
¡û
>W11123458
ADUJ01000050
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
1992
1921
-
Gln
TTG
[ENA]
¡û
>W11136818
AEGE01000539
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
15734
15807
+
Gln
TTG
[ENA]
¡û
>C161040321
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
393446
393517
+
Gln
TTG
-
¡û
>C161040380
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
2099843
2099914
+
Gln
TTG
[Ensembl]
¡û
>W1710514729
FNBE01000009
Actinomycetota
Pseudonocardia oroxyli [FNBE]
222528
222455
-
Gln
TTG
[ENA]
¡û
>W1710558794
FOME01000002
Actinomycetota
Saccharopolyspora kobensis jiangxiensis [FOME]
547655
547728
+
Gln
TTG
[ENA]
¡û
>W1710584441
FQVN01000010
Actinomycetota
Streptoalloteichus hindustanus [FQVN]
80584
80655
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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