This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411683 (97 seq.)
>W1711095177
LTGO01000064
Actinomycetota
Corynebacterium sp. HMSC067D03 [LTGO]
63105
63178
+
Gly
CCC
[ENA]
¡û
>W1711096609
LTHX01000050
Actinomycetota
Corynebacterium sp. HMSC055D05 [LTHX]
16979
16906
-
Gly
CCC
[ENA]
¡û
>W1711103647
LTOW01000074
Actinomycetota
Corynebacterium sp. HMSC070H05 [LTOW]
1245
1172
-
Gly
CCC
[ENA]
¡û
>W1711105929
LTRH01000040
Actinomycetota
Corynebacterium sp. HMSC036E10 [LTRH]
51893
51966
+
Gly
CCC
[ENA]
¡û
>W131159278
AQUX01000005
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
103626
103553
-
Gly
CCC
[ENA]
¡û
>W1711106532
LTRY01000006
Actinomycetota
Corynebacterium sp. HMSC034E11 [LTRY]
13819
13892
+
Gly
CCC
[ENA]
¡û
>W1711106687
LTSB01000118
Actinomycetota
Corynebacterium sp. HMSC034B08 [LTSB]
93611
93538
-
Gly
CCC
[ENA]
¡û
>W1711109771
LTUY01000019
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
25554
25627
+
Gly
CCC
[ENA]
¡û
>W1711114770
LTZO01000099
Actinomycetota
Corynebacterium sp. HMSC11D10 [LTZO]
722
795
+
Gly
CCC
[ENA]
¡û
>W131164523
ARAV01000011
Actinomycetota
Corynebacterium lubricantis DSM 45231 [ARAV]
73534
73461
-
Gly
CCC
[ENA]
¡û
>W1711185862
LWNT01000016
Actinomycetota
Corynebacterium sp. HMSC08F01 [LWNT]
15110
15183
+
Gly
CCC
[ENA]
¡û
>W1711185948
LWNU01000051
Actinomycetota
Corynebacterium sp. HMSC08D02 [LWNU]
55540
55613
+
Gly
CCC
[ENA]
¡û
>W1711186710
LWOK01000050
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
59766
59839
+
Gly
CCC
[ENA]
¡û
>W1711186795
LWOM01000082
Actinomycetota
Corynebacterium sp. HMSC05C01 [LWOM]
15647
15720
+
Gly
CCC
[ENA]
¡û
>W131215957
ATVK01000057
Actinomycetota
Gordonia hirsuta DSM 44140 = NBRC 16056 [ATVK]
2679
2606
-
Gly
CCC
[ENA]
¡û
>W1711281714
LZMK01000130
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
5755
5828
+
Gly
CCC
[ENA]
¡û
>W1711285873
LZSP01000264
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
22318
22247
-
Gly
CCC
[ENA]
¡û
>W131229904
AUHE01000001
Actinomycetota
Gordonia shandongensis DSM 45094 [AUHE]
492745
492818
+
Gly
CCC
[ENA]
¡û
>W131239551
BANT01000036
Actinomycetota
Gordonia hirsuta DSM 44140 = NBRC 16056 [BANT]
2679
2606
-
Gly
CCC
[ENA]
¡û
>W1711510268
MLAL01000027
Actinomycetota
Corynebacterium sp. NML130628 [MLAL]
1018
1091
+
Gly
CCC
[ENA]
¡û
>W1711511666
MLCQ01000001
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
202
129
-
Gly
CCC
[ENA]
¡û
>W1711511739
MLCR01000010
Actinomycetota
Corynebacterium sp. NML120713 [MLCR]
83824
83751
-
Gly
CCC
[ENA]
¡û
>W1711717101
MTGK01000009
Actinomycetota
Corynebacterium jeikeium [MTGK]
3970
3897
-
Gly
CCC
[ENA]
¡û
>C171001834
CP009244
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 DSM 20306 [CP009244]
2530118
2530191
+
Gly
CCC
-
¡û
>C171002097
CP009249
Actinomycetota
Corynebacterium phocae M408/89/1 [CP009249]
2473013
2473086
+
Gly
CCC
-
¡û
>C171064757
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
271174
271101
-
Gly
CCC
-
¡û
>C005923
CR931997
Actinomycetota
Corynebacterium jeikeium K411 K411 [CR931997]
404985
405058
+
Gly
CCC
[Ensembl]
¡û
>WENV180032030
FTJU01013755
[FTJU] metagenome; soil
1039
966
-
Gly
CCC
[ENA]
¢þ
>WENV180402709
OBRQ01013107
[OBRQ] human gut metagenome; ENVO:feces
258
185
-
Gly
CCC
[ENA]
¢þ
>WENV181212340
OFBO01002182
[OFBO] metagenome; hydrothermal vent
401
328
-
Gly
CCC
[ENA]
¢þ
>W141231373
BATZ01000031
Actinomycetota
Nocardia otitidiscaviarum IFM 11049 [BATZ]
14706
14779
+
Gly
CCC
[ENA]
¡û
>W141259176
CBYN010000082
Actinomycetota
Corynebacterium jeddahense JCB [CBYN]
6565
6636
+
Gly
CCC
[ENA]
¡û
>WENV182629643
OJKT01009986
[OJKT] metagenome; surface
336
409
+
Gly
CCC
[ENA]
¢þ
>WENV182636023
OJKZ01000116
[OJKZ] metagenome; surface
15651
15578
-
Gly
CCC
[ENA]
¢þ
>WENV182641816
OJLK01001667
[OJLK] metagenome; surface
576
649
+
Gly
CCC
[ENA]
¢þ
>WENV182642236
OJLL01008032
[OJLL] metagenome; surface
54
125
+
Gly
CCC
[ENA]
¢þ
>WENV182643057
OJLS01000322
[OJLS] metagenome; surface
8894
8821
-
Gly
CCC
[ENA]
¢þ
>WENV182643303
OJLU01000411
[OJLU] metagenome; surface
207
280
+
Gly
CCC
[ENA]
¢þ
>WENV182643682
OJLW01000477
[OJLW] metagenome; surface
3893
3966
+
Gly
CCC
[ENA]
¢þ
>WENV182644925
OJLY01000838
[OJLY] metagenome; surface
37
110
+
Gly
CCC
[ENA]
¢þ
>WENV182645950
OJLZ01013168
[OJLZ] metagenome; surface
1379
1306
-
Gly
CCC
[ENA]
¢þ
>WENV182645984
OJLZ01018199
[OJLZ] metagenome; surface
476
403
-
Gly
CCC
[ENA]
¢þ
>WENV182671839
OJNM01004445
[OJNM] metagenome; surface
1530
1603
+
Gly
CCC
[ENA]
¢þ
>WENV183511290
OMJG01000002
[OMJG] food metagenome; Cotija cheese
140096
140023
-
Gly
CCC
[ENA]
¢þ
>WENV170717275
LSQX01029919
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4000
3929
-
Gly
CCC
[ENA]
¢þ
>W141452840
JFCF01000020
Actinomycetota
Corynebacterium jeikeium [JFCF]
1380
1307
-
Gly
CCC
[ENA]
¡û
>W141452926
JFCG01000048
Actinomycetota
Corynebacterium jeikeium [JFCG]
4466
4393
-
Gly
CCC
[ENA]
¡û
>W141452966
JFCH01000054
Actinomycetota
Corynebacterium jeikeium [JFCH]
152894
152967
+
Gly
CCC
[ENA]
¡û
>W141453188
JFCM01000029
Actinomycetota
Corynebacterium jeikeium [JFCM]
116076
116149
+
Gly
CCC
[ENA]
¡û
>W141453451
JFCR01000014
Actinomycetota
Corynebacterium jeikeium [JFCR]
44841
44768
-
Gly
CCC
[ENA]
¡û
>C181039038
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
2314289
2314360
+
Gly
CCC
-
¡û
>C181211239
LS483404
Actinomycetota
Corynebacterium renale NCTC11140 [LS483404]
144015
144086
+
Gly
CCC
-
¡û
>C181225929
LT906467
Actinomycetota
Corynebacterium imitans NCTC13015 [LT906467]
2351899
2351972
+
Gly
CCC
-
¡û
>C181226227
LT906473
Actinomycetota
Corynebacterium cystitidis NCTC11863 [LT906473]
2989421
2989348
-
Gly
CCC
-
¡û
>C191163647
CP039247
Actinomycetota
Corynebacterium endometrii LMM-1653 [CP039247]
2291130
2291203
+
Gly
CCC
-
¡û
>W09127973
ACLJ01000067
Actinomycetota
Corynebacterium genitalium ATCC 33030 [ACLJ]
49203
49130
-
Gly
CCC
[ENA]
¡û
>W1910225848
FMSX01000017
Actinomycetota
Corynebacterium sp. MC3 [FMSX]
234981
235054
+
Gly
CCC
[ENA]
¡û
>W1911179016
NQMQ01000007
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
70985
71058
+
Gly
CCC
[ENA]
¡û
>W1911243585
NSGP01000003
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
107797
107724
-
Gly
CCC
[ENA]
¡û
>W1911596551
PNHG01000003
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
23416
23343
-
Gly
CCC
[ENA]
¡û
>W1810187361
PKHN01000006
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
115355
115282
-
Gly
CCC
[ENA]
¡û
>W1810187455
PKHP01000004
Actinomycetota
Corynebacterium coyleae UMB0989 [PKHP]
212782
212855
+
Gly
CCC
[ENA]
¡û
>W1810402975
PYHT01000020
Actinomycetota
Nocardia sp. MDA0666 [PYHT]
109306
109377
+
Gly
CCC
[ENA]
¡û
>W1810568940
QEEZ01000005
Actinomycetota
Corynebacterium yudongzhengii 2189 [QEEZ]
99653
99580
-
Gly
CCC
[ENA]
¡û
>C151005938
CP004350
Actinomycetota
Corynebacterium casei LMG S-19264 [CP004350]
2854595
2854668
+
Gly
CCC
[Ensembl]
¡û
>C151045596
CP009215
Actinomycetota
Corynebacterium ureicelerivorans IMMIB RIV-2301 [CP009215]
2040236
2040307
+
Gly
CCC
[Ensembl]
¡û
>C151084451
CP011545
Actinomycetota
Corynebacterium testudinoris DSM 44614 [CP011545]
2523353
2523426
+
Gly
CCC
[Ensembl]
¡û
>C151084498
CP011546
Actinomycetota
Corynebacterium uterequi DSM 45634 [CP011546]
2155497
2155568
+
Gly
CCC
[Ensembl]
¡û
>W10106877
ACYW01000032
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
11582
11509
-
Gly
CCC
[ENA]
¡û
>W10116375
ADNS01000013
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
26044
26117
+
Gly
CCC
[ENA]
¡û
>W11109166
ACYW01000032
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
11582
11509
-
Gly
CCC
[ENA]
¡û
>W11121044
ADNS01000013
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
26044
26117
+
Gly
CCC
[ENA]
¡û
>C161041049
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
2312302
2312229
-
Gly
CCC
[Ensembl]
¡û
>W121124956
BAFQ01000203
Actinomycetota
Nocardia aobensis NBRC 100429 [BAFQ]
43784
43855
+
Gly
CCC
[ENA]
¡û
>W121125239
BAFW01000250
Actinomycetota
Nocardia cerradoensis NBRC 101014 [BAFW]
7557
7628
+
Gly
CCC
[ENA]
¡û
>W121127400
CAFW01000076
Actinomycetota
Corynebacterium casei UCMA 3821 [CAFW]
68141
68068
-
Gly
CCC
[ENA]
¡û
>W1610074565
BCWU01000002
Actinomycetota
Gordonia hydrophobica NBRC 16057 [BCWU]
269132
269059
-
Gly
CCC
[ENA]
¡û
>W1610078369
BDAV01000015
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
278358
278287
-
Gly
CCC
[ENA]
¡û
>W1610079440
BDBQ01000059
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
13930
13859
-
Gly
CCC
[ENA]
¡û
>W1610079717
BDBV01000104
Actinomycetota
Nocardia mexicana NBRC 108244 [BDBV]
22142
22071
-
Gly
CCC
[ENA]
¡û
>W1610080039
BDCC01000004
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
41624
41695
+
Gly
CCC
[ENA]
¡û
>W1610080600
BDCM01000005
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
11671
11600
-
Gly
CCC
[ENA]
¡û
>C131005400
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
2857410
2857481
+
Gly
CCC
[Ensembl]
¡û
>W1610436815
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
351550
351623
+
Gly
CCC
[ENA]
¡û
>W1611040999
LZMK01000130
Actinomycetota
Nocardia sp. 852002-20019_SCH5090214 [LZMK]
5755
5828
+
Gly
CCC
[ENA]
¡û
>W1611043434
LZSP01000264
Actinomycetota
Nocardia sp. 852002-51244_SCH5132740 [LZSP]
22318
22247
-
Gly
CCC
[ENA]
¡û
>W1710071683
BCWU01000002
Actinomycetota
Gordonia hydrophobica NBRC 16057 [BCWU]
269132
269059
-
Gly
CCC
[ENA]
¡û
>W1710076928
BDAV01000015
Actinomycetota
Nocardia africana NBRC 100379 [BDAV]
278358
278287
-
Gly
CCC
[ENA]
¡û
>W1710077999
BDBQ01000059
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
13930
13859
-
Gly
CCC
[ENA]
¡û
>W1710078276
BDBV01000104
Actinomycetota
Nocardia mexicana NBRC 108244 [BDBV]
22142
22071
-
Gly
CCC
[ENA]
¡û
>W1710078598
BDCC01000004
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
41624
41695
+
Gly
CCC
[ENA]
¡û
>W1710079159
BDCM01000005
Actinomycetota
Nocardia mikamii NBRC 108933 [BDCM]
11671
11600
-
Gly
CCC
[ENA]
¡û
>W1710436551
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
351550
351623
+
Gly
CCC
[ENA]
¡û
>W1710534317
FNRU01000002
Actinomycetota
Corynebacterium coyleae [FNRU]
806093
806166
+
Gly
CCC
[ENA]
¡û
>W1710552144
FOGQ01000005
Actinomycetota
Corynebacterium cystitidis DSM 20524 [FOGQ]
61070
61143
+
Gly
CCC
[ENA]
¡û
>W1710595995
FTMH01000018
Actinomycetota
Corynebacterium afermentans [FTMH]
14111
14040
-
Gly
CCC
[ENA]
¡û
>W1710608165
FXAR01000003
Actinomycetota
Corynebacterium pollutisoli [FXAR]
94593
94522
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK