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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411772 (64 seq.)
>W1710875549
LMOM01000012
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
71646
71719
+
Gly
TCC
[ENA]
¡û
>W131104573
APCS01000034
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
24245
24172
-
Gly
TCC
[ENA]
¡û
>W131176755
ARKH01000088
Deinococcota
Deinococcus aquatilis DSM 23025 [ARKH]
816
889
+
Gly
TCC
[ENA]
¡û
>W131178666
ARLS01000053
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
290422
290495
+
Gly
TCC
[ENA]
¡û
>W131213903
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
1503607
1503534
-
Gly
TCC
[ENA]
¡û
>W131237112
AUMV01000014
Deinococcota
Deinococcus ficus DSM 19119 [AUMV]
14486
14559
+
Gly
TCC
[ENA]
¡û
>W1711708232
MSTI01000026
Deinococcota
Deinococcus marmoris [MSTI]
322
395
+
Gly
TCC
[ENA]
¡û
>W1711708268
MSTI01000173
Deinococcota
Deinococcus marmoris [MSTI]
34700
34773
+
Gly
TCC
[ENA]
¡û
>W1711743908
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
1258102
1258175
+
Gly
TCC
[ENA]
¡û
>W1712080666
NHMK01000014
Deinococcota
Deinococcus indicus [NHMK]
238145
238218
+
Gly
TCC
[ENA]
¡û
>C007737
CP000359
Deinococcota
Deinococcus geothermalis DSM 11300 [CP000359]
2353738
2353665
-
Gly
TCC
[Ensembl]
¡û
>C007968
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
652707
652634
-
Gly
TCC
[Ensembl]
¡û
>WENV180231905
OBCO01000030
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
43288
43361
+
Gly
TCC
[ENA]
¢þ
>WENV180232914
OBCP01000031
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
43288
43361
+
Gly
TCC
[ENA]
¢þ
>WENV180569842
OCLR01000563
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
8807
8734
-
Gly
TCC
[ENA]
¢þ
>WENV180570787
OCLS01000576
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
8808
8735
-
Gly
TCC
[ENA]
¢þ
>WENV180571274
OCLT01000033
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
43288
43361
+
Gly
TCC
[ENA]
¢þ
>WENV180573513
OCLW01000032
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
43288
43361
+
Gly
TCC
[ENA]
¢þ
>WENV180639586
OCRL01000035
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
43288
43361
+
Gly
TCC
[ENA]
¢þ
>WENV180640514
OCRM01000033
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
43288
43361
+
Gly
TCC
[ENA]
¢þ
>WENV181223651
OFDC01058207
[OFDC] hot springs metagenome; Water
388
461
+
Gly
TCC
[ENA]
¢þ
>W141154789
AXLL01000167
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
4331
4404
+
Gly
TCC
[ENA]
¡û
>W141169930
AXWT01000024
Deinococcota
Deinococcus murrayi DSM 11303 [AXWT]
21859
21932
+
Gly
TCC
[ENA]
¡û
>WENV183636527
OOKD01059617
[OOKD] human gut metagenome; Skin biopsy
455
528
+
Gly
TCC
[ENA]
¢þ
>C181134301
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
2628035
2627962
-
Gly
TCC
-
¡û
>C181179584
CP029494
Deinococcota
Deinococcus irradiatisoli 17bor-2 [CP029494]
364389
364316
-
Gly
TCC
-
¡û
>C181185121
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
126711
126638
-
Gly
TCC
-
¡û
>C181196460
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
1627864
1627937
+
Gly
TCC
-
¡û
>C191018448
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
2506216
2506289
+
Gly
TCC
-
¡û
>W141525688
JHAC01000027
Deinococcota
Deinococcus phoenicis [JHAC]
3247
3174
-
Gly
TCC
[ENA]
¡û
>C191121216
CP034183
Deinococcota
Deinococcus psychrotolerans S14-83 [CP034183, CP034184]
2504849
2504776
-
Gly
TCC
-
¡û
>W141561441
JHYL01000001
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
43580
43653
+
Gly
TCC
[ENA]
¡û
>W09102014
AAHE01000007
Deinococcota
Deinococcus geothermalis DSM 11300 [AAHE]
7595
7668
+
Gly
TCC
[ENA]
¡û
>W141702044
JMLF01000001
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
43465
43538
+
Gly
TCC
[ENA]
¡û
>W141711953
JMQF01000040
Deinococcota
Deinococcus sp. RL [JMQF]
20696
20769
+
Gly
TCC
[ENA]
¡û
>W141731129
JNIV01000031
Deinococcota
Deinococcus marmoris DSM 12784 [JNIV]
33464
33537
+
Gly
TCC
[ENA]
¡û
>W141731194
JNIW01000076
Deinococcota
Deinococcus frigens DSM 12807 [JNIW]
11897
11970
+
Gly
TCC
[ENA]
¡û
>W141821111
JQNI01000002
Deinococcota
Deinococcus sp. YIM 77859 [JQNI]
1749743
1749816
+
Gly
TCC
[ENA]
¡û
>C09103922
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
166638
166565
-
Gly
TCC
[Ensembl]
¡û
>W1911597505
PNOR01000061
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
13171
13244
+
Gly
TCC
[ENA]
¡û
>W1911788271
QYCQ01000119
Deinococcota
Deinococcus sp. RM [QYCQ]
2076
2003
-
Gly
TCC
[ENA]
¡û
>W1911802521
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
950084
950011
-
Gly
TCC
[ENA]
¡û
>W1810003552
BFAG01000012
Deinococcota
Deinococcus aerius TR0125 [BFAG]
136147
136074
-
Gly
TCC
[ENA]
¡û
>SRA1003701
SRR002327.133360
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
69
142
+
Gly
TCC
[SRA]
>W1810238342
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
2378318
2378245
-
Gly
TCC
[ENA]
¡û
>W1810423342
PYSV01000010
Deinococcota
Deinococcus arcticus OD32 [PYSV]
1925
1852
-
Gly
TCC
[ENA]
¡û
>W1810671616
QJSX01000012
Deinococcota
Deinococcus yavapaiensis KR-236 DSM 18048 [QJSX]
4643
4716
+
Gly
TCC
[ENA]
¡û
>C151063625
CP010028
Deinococcota
Deinococcus radiopugnans DY59 [CP010028]
22009
22082
+
Gly
TCC
[Ensembl]
¡û
>C151081908
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
1937734
1937661
-
Gly
TCC
[Ensembl]
¡û
>C10105370
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
652707
652634
-
Gly
TCC
[Ensembl]
¡û
>C11107241
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
1598235
1598162
-
Gly
TCC
[Ensembl]
¡û
>C11107297
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
652707
652634
-
Gly
TCC
[Ensembl]
¡û
>C121002080
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
2594721
2594648
-
Gly
TCC
[Ensembl]
¡û
>C161034755
CP011387
Deinococcota
Deinococcus puniceus DY1 [CP011387]
2701655
2701582
-
Gly
TCC
[Ensembl]
¡û
>C161061626
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
129112
129039
-
Gly
TCC
[Ensembl]
¡û
>C161082972
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
2072874
2072947
+
Gly
TCC
-
¡û
>W1610061585
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
3197167
3197240
+
Gly
TCC
[ENA]
¡û
>C131003566
CP003382
Deinococcota
Deinococcus peraridilitoris DSM 19664 [CP003382]
1399767
1399840
+
Gly
TCC
[Ensembl]
¡û
>W1610638973
LIYN01000003
Deinococcota
Deinococcus sp. UR1 [LIYN]
6825
6898
+
Gly
TCC
[ENA]
¡û
>W1610737895
LMOM01000012
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
71646
71719
+
Gly
TCC
[ENA]
¡û
>W1710059250
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
3197167
3197240
+
Gly
TCC
[ENA]
¡û
>W1710542286
FNZA01000018
Deinococcota
Deinococcus reticulitermitis [FNZA]
61688
61761
+
Gly
TCC
[ENA]
¡û
>W1710605350
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
97425
97352
-
Gly
TCC
[ENA]
¡û
>W1710774867
LIYN01000003
Deinococcota
Deinococcus sp. UR1 [LIYN]
6825
6898
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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