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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411790 (89 seq.)
>W1710785203
LJHQ01000070
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
88051
88125
+
Gln
TTG
[ENA]
¡û
>W1710869532
LMJU01000016
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
208433
208359
-
Gln
TTG
[ENA]
¡û
>W1710873194
LMMP01000034
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
152853
152927
+
Gln
TTG
[ENA]
¡û
>W1710873799
LMNB01000023
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
643190
643116
-
Gln
TTG
[ENA]
¡û
>W1710893360
LNER01000241
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
2442
2368
-
Gln
TTG
[ENA]
¡û
>W1711073136
LSIG01000150
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
14607
14681
+
Gln
TTG
[ENA]
¡û
>W1711073294
LSIK01000132
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
9080
9006
-
Gln
TTG
[ENA]
¡û
>W1711074621
LSJR01000467
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
93
167
+
Gln
TTG
[ENA]
¡û
>W1711074781
LSJV01000176
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
74227
74153
-
Gln
TTG
[ENA]
¡û
>W1711075579
LSKN01000235
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
74418
74344
-
Gln
TTG
[ENA]
¡û
>W131162099
AQYH01000010
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
15517
15591
+
Gln
TTG
[ENA]
¡û
>W131223699
AUCG01000016
Alphaproteobacteria
Niveispirillum irakense DSM 11586 [AUCG]
496673
496747
+
Gln
TTG
[ENA]
¡û
>W1711502396
MKSQ01000022
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
235229
235155
-
Gln
TTG
[ENA]
¡û
>C171049971
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
4198486
4198560
+
Gln
TTG
-
¡û
>W131159754
AQVT01000001
Alphaproteobacteria
Methylobacterium sp. 88A [AQVT]
3459893
3459967
+
Gln
TTG
[ENA]
¡û
>W131230381
AUHO01000005
Alphaproteobacteria
Kaistia adipata DSM 17808 [AUHO]
8668
8594
-
Gln
TTG
[ENA]
¡û
>WENV180019655
FTCF01000318
[FTCF] metagenome; soil
4093
4019
-
Gln
TTG
[ENA]
¡û
>W141065493
AQPH01000032
Alphaproteobacteria
Magnetospirillum fulvum MGU-K5 [AQPH]
8063
8137
+
Gln
TTG
[ENA]
¡û
>W141096517
AVFL01000005
Alphaproteobacteria
Skermanella stibiiresistens SB22 [AVFL]
295319
295245
-
Gln
TTG
[ENA]
¡û
>WENV181166566
OEIU01000640
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
29801
29727
-
Gln
TTG
[ENA]
¡û
>WENV181415298
OGCL01007506
[OGCL] hot springs metagenome; Hot spring water
4242
4316
+
Gln
TTG
[ENA]
¡û
>W141241793
CAHP01000011
Alphaproteobacteria
Magnetospirillum molischianum DSM 120 [CAHP]
126420
126494
+
Gln
TTG
[ENA]
¡û
>WENV170003726
AGTN01428251
[AGTN] bioreactor metagenome; poplar biomass
3535
3461
-
Gln
TTG
[ENA]
¡û
>WENV170680835
LFEF01026381
[LFEF] freshwater metagenome; waterbloom
8383
8309
-
Gln
TTG
[ENA]
¡û
>WENV171003162
NNBT01002028
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
26415
26341
-
Gln
TTG
[ENA]
¡û
>WENV171003770
NNBV01000699
[NNBV] plant metagenome; symbiotic tissue sample KVS11
96900
96826
-
Gln
TTG
[ENA]
¡û
>W141805318
JPKG01000046
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
157437
157363
-
Gln
TTG
[ENA]
¡û
>W141815791
JQJJ01000008
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
844267
844193
-
Gln
TTG
[ENA]
¡û
>W1911802655
QYUL01000002
Alphaproteobacteria
Azospirillum sp. K2W22B-5 [QYUL]
139912
139838
-
Gln
TTG
[ENA]
¡û
>W1810252022
PQFZ01000012
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
109177
109103
-
Gln
TTG
[ENA]
¡û
>W1810603344
QGLE01000001
Alphaproteobacteria
Zavarzinia aquatilis HR-AS [QGLE]
690483
690557
+
Gln
TTG
[ENA]
¡û
>W1810783314
QQTO01000021
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
122663
122737
+
Gln
TTG
[ENA]
¡û
>W1810783369
QQTP01000023
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
69974
70048
+
Gln
TTG
[ENA]
¡û
>W2010104859
BJYZ01000017
Alphaproteobacteria
Skermanella aerolata NBRC 106429 [BJYZ]
176255
176329
+
Gln
TTG
[ENA]
¡û
>W2010105694
BJZT01000008
Alphaproteobacteria
Methylobacterium haplocladii NBRC 107714 [BJZT]
87683
87757
+
Gln
TTG
[ENA]
¡û
>W2010699962
JACHFM010000003
Alphaproteobacteria
Amaricoccus macauensis DSM 101730 [JACHFM]
350573
350499
-
Gln
TTG
[ENA]
¡û
>W2011344286
QYUL01000002
Alphaproteobacteria
Azospirillum sp. K2W22B-5 [QYUL]
139912
139838
-
Gln
TTG
[ENA]
¡û
>W2011772931
UBPN01000011
Alphaproteobacteria
Rhizobiales bacterium [UBPN]
13301
13375
+
Gln
TTG
[ENA]
¡û
>W2011773195
UBPT01000008
Alphaproteobacteria
Rhizobiales bacterium [UBPT]
354400
354326
-
Gln
TTG
[ENA]
¡û
>W2011780112
UBVX01000041
Alphaproteobacteria
Rhizobiales bacterium [UBVX]
62704
62630
-
Gln
TTG
[ENA]
¡û
>W2011783841
UBZE01000006
Alphaproteobacteria
Rhizobiales bacterium [UBZE]
530895
530821
-
Gln
TTG
[ENA]
¡û
>W2011789636
UCEG01000039
Alphaproteobacteria
Rhizobiales bacterium [UCEG]
13301
13375
+
Gln
TTG
[ENA]
¡û
>W2011789913
UCEN01000008
Alphaproteobacteria
Rhizobiales bacterium [UCEN]
54953
55027
+
Gln
TTG
[ENA]
¡û
>W2011793575
UCHQ01000040
Alphaproteobacteria
Rhizobiales bacterium [UCHQ]
23097
23023
-
Gln
TTG
[ENA]
¡û
>W2011796016
UCJT01000144
Alphaproteobacteria
Rhizobiales bacterium [UCJT]
13122
13196
+
Gln
TTG
[ENA]
¡û
>W2011796616
UCKH01000033
Alphaproteobacteria
Rhizobiales bacterium [UCKH]
8695
8769
+
Gln
TTG
[ENA]
¡û
>W2012017077
VFMG01000001
Alphaproteobacteria
Bosea sp. AK1 [VFMG]
3443428
3443502
+
Gln
TTG
[ENA]
¡û
>W2012022477
VFQA01000004
Alphaproteobacteria
Bosea vestrisii 3192 [VFQA]
6417
6491
+
Gln
TTG
[ENA]
¡û
>W2012127006
VRVC01000005
Alphaproteobacteria
Methylobacterium sp. WL19 [VRVC]
387
313
-
Gln
TTG
[ENA]
¡û
>W2012221286
VZZK01000011
Alphaproteobacteria
Methylobacterium soli YIM 48816 [VZZK]
129522
129596
+
Gln
TTG
[ENA]
¡û
>W2110325622
JADIJP010000007
Alphaproteobacteria
Methylobacterium sp. SD274 [JADIJP]
151661
151587
-
Gln
TTG
[ENA]
¡û
>W2110424815
JAELTI010000012
Alphaproteobacteria
Bosea sp. ASV33 [JAELTI]
48612
48686
+
Gln
TTG
[ENA]
¡û
>W2110523037
JAGEMM010000008
Alphaproteobacteria
Microvirga sp. 3D7 [JAGEMM]
41689
41615
-
Gln
TTG
[ENA]
¡û
>W2110574847
JAGTUF010000017
Alphaproteobacteria
Magnetospirillum sp. J10 [JAGTUF]
27492
27566
+
Gln
TTG
[ENA]
¡û
>W2110698646
JAIUIE010000001
Alphaproteobacteria
Mesorhizobium sp. BR1-1-16 [JAIUIE]
247758
247684
-
Gln
TTG
[ENA]
¡û
>W10106921
ACYY01000005
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
110359
110433
+
Gln
TTG
[ENA]
¡û
>W2110752777
NKUG01000051
Alphaproteobacteria
Methylobacterium bullatum LMG 24788 [NKUG]
72766
72840
+
Gln
TTG
[ENA]
¡û
>C231458611
CP102772
Alphaproteobacteria
Bosea sp. NBC_00550 [CP102772]
2742691
2742617
-
Gln
TTG
-
¡û
>C241058485
CP041636
Alphaproteobacteria
Ferrovibrio terrae K5 [CP041636]
4220049
4220123
+
Gln
TTG
-
¡û
>C241320901
CP134779
Alphaproteobacteria
Bosea sp. 685 [CP134779]
5666250
5666324
+
Gln
TTG
-
¡û
>W2310012842
BPQF01000013
Alphaproteobacteria
Methylobacterium bullatum DSM 21893 [BPQF]
45024
44950
-
Gln
TTG
[ENA]
¡û
>W2310013205
BPQN01000030
Alphaproteobacteria
Methylobacterium haplocladii DSM 24195 [BPQN]
43126
43052
-
Gln
TTG
[ENA]
¡û
>W2310013602
BPQV01000017
Alphaproteobacteria
Methylobacterium organophilum NBRC 15689 [BPQV]
56353
56279
-
Gln
TTG
[ENA]
¡û
>W2310013694
BPQY01000004
Alphaproteobacteria
Methylobacterium soli KCTC 22810 [BPQY]
9724
9650
-
Gln
TTG
[ENA]
¡û
>W11109210
ACYY01000005
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
110359
110433
+
Gln
TTG
[ENA]
¡û
>W1511353041
JROW01000693
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
5539
5465
-
Gln
TTG
[ENA]
¡û
>C161070678
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
2641162
2641236
+
Gln
TTG
[Ensembl]
¡û
>W1610026875
AVFK01000005
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
18743
18669
-
Gln
TTG
[ENA]
¡û
>W1610550635
JXTJ01000010
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
238940
239014
+
Gln
TTG
[ENA]
¡û
>W1610617163
LGSZ01000028
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
133277
133351
+
Gln
TTG
[ENA]
¡û
>W1610649009
LJHQ01000070
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
88051
88125
+
Gln
TTG
[ENA]
¡û
>W1610720378
LMAR01000051
Alphaproteobacteria
Bosea thiooxidans [LMAR]
17054
17128
+
Gln
TTG
[ENA]
¡û
>W1610731878
LMJU01000016
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
208433
208359
-
Gln
TTG
[ENA]
¡û
>W1610735111
LMMG01000001
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
578952
578878
-
Gln
TTG
[ENA]
¡û
>W1610735540
LMMP01000034
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
152853
152927
+
Gln
TTG
[ENA]
¡û
>W1610735720
LMMS01000028
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
155598
155524
-
Gln
TTG
[ENA]
¡û
>W1610736145
LMNB01000023
Alphaproteobacteria
Methylobacterium sp. Leaf106 [LMNB]
643190
643116
-
Gln
TTG
[ENA]
¡û
>W1610753626
LNER01000241
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
2442
2368
-
Gln
TTG
[ENA]
¡û
>W1610912441
LSIG01000150
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
14607
14681
+
Gln
TTG
[ENA]
¡û
>W1610912599
LSIK01000132
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
9080
9006
-
Gln
TTG
[ENA]
¡û
>W1610913926
LSJR01000467
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
93
167
+
Gln
TTG
[ENA]
¡û
>W1610914030
LSJU01000644
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
61
135
+
Gln
TTG
[ENA]
¡û
>W1610914086
LSJV01000176
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
74227
74153
-
Gln
TTG
[ENA]
¡û
>W1610914884
LSKN01000235
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
74418
74344
-
Gln
TTG
[ENA]
¡û
>W1710023040
AVFK01000005
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
18743
18669
-
Gln
TTG
[ENA]
¡û
>W1710540191
FNWO01000003
Alphaproteobacteria
Magnetospirillum fulvum [FNWO]
141547
141473
-
Gln
TTG
[ENA]
¡û
>W1710564933
FOQV01000007
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
214518
214444
-
Gln
TTG
[ENA]
¡û
>W1710583168
FQUP01000001
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
428401
428475
+
Gln
TTG
[ENA]
¡û
>W1710596457
FTMO01000024
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
37362
37288
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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