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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.411803 (120 seq.)
>W1710997817
LQCI01000009
Actinomycetota
Amycolatopsis regifaucium [LQCI]
507700
507771
+
Cys
GCA
[ENA]
¡û
>W1711055724
LRVD01000014
Actinomycetota
Cutibacterium avidum [LRVD]
337272
337343
+
Cys
GCA
[ENA]
¡û
>W1711108070
LTTJ01000023
Actinomycetota
Propionibacterium sp. HMSC062D05 [LTTJ]
221669
221740
+
Cys
GCA
[ENA]
¡û
>W1711267698
LZCI01000008
Actinomycetota
Cutibacterium acnes [LZCI]
353094
353165
+
Cys
GCA
[ENA]
¡û
>W131230869
AUHZ01000007
Actinomycetota
Acidipropionibacterium thoenii DSM 20276 [AUHZ]
96971
96900
-
Cys
GCA
[ENA]
¡û
>W1711662709
MQUP01000035
Actinomycetota
Amycolatopsis keratiniphila subsp. nogabecina [MQUP]
186141
186212
+
Cys
GCA
[ENA]
¡û
>C171055669
CP017040
Actinomycetota
Cutibacterium modestum F0672 [CP017040]
415591
415520
-
Cys
GCA
-
¡û
>WENV180559288
OCKC01000027
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
97036
96965
-
Cys
GCA
[ENA]
¢þ
>WENV180697270
ODDD01001346
[ODDD] human metagenome; G_DNA_Posterior fornix
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180700189
ODDN01001346
[ODDN] human metagenome; G_DNA_Buccal mucosa
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180706330
ODEN01001346
[ODEN] human metagenome; G_DNA_Posterior fornix
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180729224
ODGU01265935
[ODGU] human metagenome; G_DNA_Supragingival plaque
150
79
-
Cys
GCA
[ENA]
¢þ
>WENV180731922
ODGW01036929
[ODGW] human metagenome; G_DNA_Supragingival plaque
364
293
-
Cys
GCA
[ENA]
¢þ
>WENV180734129
ODGZ01002903
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1275
1346
+
Cys
GCA
[ENA]
¢þ
>WENV180734152
ODGZ01003216
[ODGZ] human metagenome; G_DNA_Supragingival plaque
6007
5936
-
Cys
GCA
[ENA]
¢þ
>WENV180735593
ODHB01000076
[ODHB] human metagenome; G_DNA_Supragingival plaque
32561
32490
-
Cys
GCA
[ENA]
¢þ
>WENV180750037
ODHS01000285
[ODHS] human metagenome; G_DNA_Supragingival plaque
4550
4621
+
Cys
GCA
[ENA]
¢þ
>WENV180754996
ODHU01006635
[ODHU] human metagenome; G_DNA_Supragingival plaque
1852
1923
+
Cys
GCA
[ENA]
¢þ
>WENV180777159
ODIL01000195
[ODIL] human metagenome; G_DNA_Supragingival plaque
12301
12372
+
Cys
GCA
[ENA]
¢þ
>WENV180781571
ODIP01000829
[ODIP] human metagenome; G_DNA_Supragingival plaque
830
901
+
Cys
GCA
[ENA]
¢þ
>WENV180789106
ODIS01234690
[ODIS] human metagenome; G_DNA_Supragingival plaque
148
77
-
Cys
GCA
[ENA]
¢þ
>WENV180797050
ODJB01026544
[ODJB] human metagenome; G_DNA_Supragingival plaque
307
236
-
Cys
GCA
[ENA]
¢þ
>WENV180801132
ODJD01009131
[ODJD] human metagenome; G_DNA_Supragingival plaque
1373
1444
+
Cys
GCA
[ENA]
¢þ
>WENV180805328
ODJG01171799
[ODJG] human metagenome; G_DNA_Supragingival plaque
145
74
-
Cys
GCA
[ENA]
¢þ
>WENV180814106
ODJO01007197
[ODJO] human metagenome; G_DNA_Supragingival plaque
4529
4600
+
Cys
GCA
[ENA]
¢þ
>WENV180822979
ODJW01001483
[ODJW] human metagenome; G_DNA_Supragingival plaque
4742
4813
+
Cys
GCA
[ENA]
¢þ
>WENV180824646
ODJX01023858
[ODJX] human metagenome; G_DNA_Supragingival plaque
190
261
+
Cys
GCA
[ENA]
¢þ
>WENV180832911
ODKC01007734
[ODKC] human metagenome; G_DNA_Supragingival plaque
540
469
-
Cys
GCA
[ENA]
¢þ
>WENV180833924
ODKD01001002
[ODKD] human metagenome; G_DNA_Supragingival plaque
8780
8851
+
Cys
GCA
[ENA]
¢þ
>WENV180835929
ODKE01021698
[ODKE] human metagenome; G_DNA_Supragingival plaque
212
283
+
Cys
GCA
[ENA]
¢þ
>WENV180838906
ODKH01000193
[ODKH] human metagenome; G_DNA_Anterior nares
1680
1751
+
Cys
GCA
[ENA]
¢þ
>WENV180843614
ODKN01006079
[ODKN] human metagenome; G_DNA_Supragingival plaque
2706
2635
-
Cys
GCA
[ENA]
¢þ
>WENV180847433
ODKT01082682
[ODKT] human metagenome; G_DNA_Supragingival plaque
93
164
+
Cys
GCA
[ENA]
¢þ
>WENV180859321
ODLD01000331
[ODLD] human metagenome; G_DNA_Supragingival plaque
28360
28289
-
Cys
GCA
[ENA]
¢þ
>WENV180899089
ODOA01001346
[ODOA] human metagenome; G_DNA_Tongue dorsum
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180903338
ODOU01001346
[ODOU] human metagenome; G_DNA_Tongue dorsum
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180903586
ODOY01001346
[ODOY] human metagenome; G_DNA_Tongue dorsum
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180903896
ODPD01001346
[ODPD] human metagenome; G_DNA_Stool
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180906718
ODPR01001346
[ODPR] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180907524
ODQE01001346
[ODQE] human metagenome; G_DNA_Stool
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180909733
ODQP01001346
[ODQP] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180911717
ODRV01001346
[ODRV] human metagenome; G_DNA_Buccal mucosa
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180911841
ODRX01001346
[ODRX] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV180922499
ODTJ01004886
[ODTJ] human metagenome; G_DNA_Supragingival plaque
2935
2864
-
Cys
GCA
[ENA]
¢þ
>WENV180924111
ODTK01001237
[ODTK] human metagenome; G_DNA_Supragingival plaque
6010
5939
-
Cys
GCA
[ENA]
¢þ
>WENV180927998
ODTM01009547
[ODTM] human metagenome; G_DNA_Supragingival plaque
394
465
+
Cys
GCA
[ENA]
¢þ
>WENV180933301
ODTR01000015
[ODTR] human metagenome; G_DNA_Supragingival plaque
9051
8980
-
Cys
GCA
[ENA]
¢þ
>WENV180934376
ODTS01000001
[ODTS] human metagenome; G_DNA_Subgingival plaque
265018
264947
-
Cys
GCA
[ENA]
¢þ
>WENV180938331
ODTX01001438
[ODTX] human metagenome; G_DNA_Supragingival plaque
13072
13001
-
Cys
GCA
[ENA]
¢þ
>WENV180939046
ODTX01013534
[ODTX] human metagenome; G_DNA_Supragingival plaque
1533
1462
-
Cys
GCA
[ENA]
¢þ
>WENV180944440
ODUC01017507
[ODUC] human metagenome; G_DNA_Supragingival plaque
1983
2054
+
Cys
GCA
[ENA]
¢þ
>WENV180958059
ODUL01000250
[ODUL] human metagenome; G_DNA_Supragingival plaque
12018
12089
+
Cys
GCA
[ENA]
¢þ
>WENV180964048
ODUO01000164
[ODUO] human metagenome; G_DNA_Supragingival plaque
43389
43460
+
Cys
GCA
[ENA]
¢þ
>WENV180972947
ODUW01000576
[ODUW] human metagenome; G_DNA_Supragingival plaque
11380
11309
-
Cys
GCA
[ENA]
¢þ
>WENV180980384
ODVE01000095
[ODVE] human metagenome; G_DNA_Supragingival plaque
32327
32398
+
Cys
GCA
[ENA]
¢þ
>WENV180982461
ODVF01000024
[ODVF] human metagenome; G_DNA_Supragingival plaque
72287
72358
+
Cys
GCA
[ENA]
¢þ
>WENV180987402
ODVK01021056
[ODVK] human metagenome; G_DNA_Supragingival plaque
1075
1004
-
Cys
GCA
[ENA]
¢þ
>WENV181002364
ODVX01000230
[ODVX] human metagenome; G_DNA_Supragingival plaque
14521
14450
-
Cys
GCA
[ENA]
¢þ
>WENV181009785
ODWE01209993
[ODWE] human metagenome; G_DNA_Supragingival plaque
145
74
-
Cys
GCA
[ENA]
¢þ
>WENV181020024
ODWU01038014
[ODWU] human metagenome; G_DNA_Supragingival plaque
740
811
+
Cys
GCA
[ENA]
¢þ
>WENV181049903
ODYD01003130
[ODYD] human metagenome; G_DNA_Supragingival plaque
5748
5819
+
Cys
GCA
[ENA]
¢þ
>WENV181050372
ODYD01015297
[ODYD] human metagenome; G_DNA_Supragingival plaque
697
626
-
Cys
GCA
[ENA]
¢þ
>WENV181063214
ODYP01000220
[ODYP] human metagenome; G_DNA_Supragingival plaque
33454
33525
+
Cys
GCA
[ENA]
¢þ
>WENV181068063
ODZI01113377
[ODZI] human metagenome; G_DNA_Supragingival plaque
271
342
+
Cys
GCA
[ENA]
¢þ
>WENV181070993
OEAE01066825
[OEAE] human metagenome; G_DNA_Supragingival plaque
148
77
-
Cys
GCA
[ENA]
¢þ
>WENV181071354
OEAK01001346
[OEAK] human metagenome; G_DNA_Supragingival plaque
129
58
-
Cys
GCA
[ENA]
¢þ
>WENV181076802
OEAP01014440
[OEAP] human metagenome; G_DNA_Supragingival plaque
1866
1937
+
Cys
GCA
[ENA]
¢þ
>WENV181079188
OEAS01002773
[OEAS] human metagenome; G_DNA_Supragingival plaque
9431
9360
-
Cys
GCA
[ENA]
¢þ
>WENV181082562
OEAV01000074
[OEAV] human metagenome; G_DNA_Supragingival plaque
34924
34853
-
Cys
GCA
[ENA]
¢þ
>WENV181090907
OEBC01006091
[OEBC] human metagenome; G_DNA_Supragingival plaque
947
1018
+
Cys
GCA
[ENA]
¢þ
>WENV181121932
OEFL01033308
[OEFL] human metagenome; G_DNA_Supragingival plaque
357
428
+
Cys
GCA
[ENA]
¢þ
>WENV181138099
OEGJ01106539
[OEGJ] human metagenome; G_DNA_Supragingival plaque
96
25
-
Cys
GCA
[ENA]
¢þ
>WENV181146184
OEHQ01001606
[OEHQ] human metagenome; G_DNA_Supragingival plaque
6638
6709
+
Cys
GCA
[ENA]
¢þ
>WENV181152418
OEIA01001314
[OEIA] human metagenome; G_DNA_Supragingival plaque
1456
1527
+
Cys
GCA
[ENA]
¢þ
>WENV181156543
OEIE01028093
[OEIE] human metagenome; G_DNA_Supragingival plaque
753
824
+
Cys
GCA
[ENA]
¢þ
>WENV181159263
OEIH01124240
[OEIH] human metagenome; G_DNA_Supragingival plaque
107
178
+
Cys
GCA
[ENA]
¢þ
>WENV181177204
OEJS01000125
[OEJS] human metagenome; G_DNA_Supragingival plaque
16167
16096
-
Cys
GCA
[ENA]
¢þ
>WENV181179104
OEJT01001362
[OEJT] human metagenome; G_DNA_Supragingival plaque
11012
10941
-
Cys
GCA
[ENA]
¢þ
>WENV181181675
OEJV01000062
[OEJV] human metagenome; G_DNA_Supragingival plaque
37900
37829
-
Cys
GCA
[ENA]
¢þ
>W141155773
AXMF01000003
Actinomycetota
Propionibacterium sp. KPL2005 [AXMF]
1583070
1582999
-
Cys
GCA
[ENA]
¡û
>WENV181817968
OGTQ01002496
[OGTQ] human gut metagenome; fecal sample 4 from infant 5
20
91
+
Cys
GCA
[ENA]
¢þ
>W141233234
BAVO01000001
Actinomycetota
Cutibacterium acnes JCM 18918 [BAVO]
55685
55614
-
Cys
GCA
[ENA]
¡û
>WENV182645575
OJLZ01000013
[OJLZ] metagenome; surface
80609
80680
+
Cys
GCA
[ENA]
¢þ
>WENV019338
AACY020530476
Marine microbial communities from Global Ocean Sampling (GOS)
1967
1894
-
Cys
GCA
[ENA]
>WENV182818911
OJZZ01000958
[OJZZ] human gut metagenome; human gut
471
400
-
Cys
GCA
[ENA]
¢þ
>WENV182827383
OKCZ01000020
[OKCZ] human gut metagenome; human gut
17502
17573
+
Cys
GCA
[ENA]
¢þ
>WENV182837323
OKGF01001002
[OKGF] human gut metagenome; human gut
3583
3654
+
Cys
GCA
[ENA]
¢þ
>WENV182842587
OKIF01000110
[OKIF] human gut metagenome; human gut
5526
5597
+
Cys
GCA
[ENA]
¢þ
>WENV019729
AACY020538036
Marine microbial communities from Global Ocean Sampling (GOS)
111
184
+
Cys
GCA
[ENA]
>WENV183508609
OMHE01004293
[OMHE] human oral metagenome; human oral
1109
1038
-
Cys
GCA
[ENA]
¢þ
>WENV183509306
OMHH01007241
[OMHH] human oral metagenome; human oral
741
812
+
Cys
GCA
[ENA]
¢þ
>ENV08000722
ABMI01019509
saltern metagenome; microbial fraction from low salinity saltern in San Diego, CA
29
102
+
Cys
GCA
[ENA]
¡û
>C191173828
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
1678568
1678639
+
Cys
GCA
-
¡û
>C191210843
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
1674748
1674819
+
Cys
GCA
-
¡û
>C191214558
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
1666083
1666154
+
Cys
GCA
-
¡û
>SRA1000689
SRR001046.89850
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
29
102
+
Cys
GCA
[SRA]
>SRA1000737
SRR001046.239585
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
29
102
+
Cys
GCA
[SRA]
>W10120798
ADXQ01000015
Actinomycetota
Cutibacterium acnes HL087PA1 [ADXQ]
357979
358050
+
Cys
GCA
[ENA]
¡û
>W10122147
ADYU01000021
Actinomycetota
Cutibacterium acnes HL036PA2 [ADYU]
288325
288396
+
Cys
GCA
[ENA]
¡û
>W10122515
ADZC01000028
Actinomycetota
Cutibacterium acnes HL083PA1 [ADZC]
362886
362815
-
Cys
GCA
[ENA]
¡û
>C11116527
CP002815
Actinomycetota
Cutibacterium acnes 6609 [CP002815]
1167324
1167253
-
Cys
GCA
[Ensembl]
¡û
>W11125915
ADWB01000010
Actinomycetota
Cutibacterium acnes HL096PA3 [ADWB]
239400
239471
+
Cys
GCA
[ENA]
¡û
>W11127542
ADXQ01000015
Actinomycetota
Cutibacterium acnes HL087PA1 [ADXQ]
357979
358050
+
Cys
GCA
[ENA]
¡û
>W11128891
ADYU01000021
Actinomycetota
Cutibacterium acnes HL036PA2 [ADYU]
288325
288396
+
Cys
GCA
[ENA]
¡û
>W11129259
ADZC01000028
Actinomycetota
Cutibacterium acnes HL083PA1 [ADZC]
362886
362815
-
Cys
GCA
[ENA]
¡û
>W11174134
AFUK01000001
Actinomycetota
Propionibacterium sp. CC003-HC2 [AFUK]
1943256
1943185
-
Cys
GCA
[ENA]
¡û
>C121002935
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
1690907
1690978
+
Cys
GCA
[Ensembl]
¡û
>C121007947
CP003195
Actinomycetota
Cutibacterium acnes TypeIA2 P.acn33 [CP003195]
1133836
1133765
-
Cys
GCA
[Ensembl]
¡û
>WENV050845
AACY022908463
Marine microbial communities from Global Ocean Sampling (GOS)
601
674
+
Cys
GCA
[ENA]
>WENV071357
AACY023844069
Marine microbial communities from Global Ocean Sampling (GOS)
599
672
+
Cys
GCA
[ENA]
>W1610074477
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
518266
518195
-
Cys
GCA
[ENA]
¡û
>WENV070390
AACY023807487
Marine microbial communities from Global Ocean Sampling (GOS)
294
221
-
Cys
GCA
[ENA]
>WENV070794
AACY023823300
Marine microbial communities from Global Ocean Sampling (GOS)
590
663
+
Cys
GCA
[ENA]
>WENV071178
AACY023838465
Marine microbial communities from Global Ocean Sampling (GOS)
703
630
-
Cys
GCA
[ENA]
>WENV071431
AACY023847631
Marine microbial communities from Global Ocean Sampling (GOS)
210
283
+
Cys
GCA
[ENA]
>W1610852546
LQCI01000009
Actinomycetota
Amycolatopsis regifaucium [LQCI]
507700
507771
+
Cys
GCA
[ENA]
¡û
>W1610896770
LRVD01000014
Actinomycetota
Cutibacterium avidum [LRVD]
337272
337343
+
Cys
GCA
[ENA]
¡û
>W1610958267
LVJL01000029
Actinomycetota
Cutibacterium avidum HL307PV1 [LVJL]
17938
17867
-
Cys
GCA
[ENA]
¡û
>W1611028891
LZCI01000008
Actinomycetota
Cutibacterium acnes [LZCI]
353094
353165
+
Cys
GCA
[ENA]
¡û
>W1710071595
BCWS01000001
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
518266
518195
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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